Gene detail

Detailed information of g2191.t1 in Acropora digitifera

Genomic Location: chr1Alt:35404313...35412867
NR annotation: XP_044180098.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114957333 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B5DF27	Lysyl oxidase homolog 2 OS=Rattus norvegicus OX=10116 GN=Loxl2 PE=2 SV=2
A6H737	Lysyl oxidase homolog 2 OS=Bos taurus OX=9913 GN=LOXL2 PE=2 SV=1
P58022	Lysyl oxidase homolog 2 OS=Mus musculus OX=10090 GN=Loxl2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00530 all species →	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001190 all species →	Domain	SRCR domain	Interproscan
IPR050686 all species →	Family	SRCR-S1 Scavenger Receptor	Interproscan
IPR017448 all species →	Domain	SRCR-like domain	Interproscan
IPR036772 all species →	Homologous_superfamily	SRCR-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48071 all species →	SRCR DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g2191.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2191.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

857.7Max TPM

284.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	284.05	857.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	857.68
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	438.32
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	434.24
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	408.66
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	383.72
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	360.99
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	358.37
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	324.03
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	321.20
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	315.16
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	312.09
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	298.32
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	295.41
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	275.02
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	272.48
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	271.97
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	271.37
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	265.73
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	263.97
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	263.30
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	263.27
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	260.27
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	249.88
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	247.33
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	245.62
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	242.12
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	235.85
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	229.58
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	225.70
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	222.00
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	219.38
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	215.85
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	194.96
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	189.94
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	189.24
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	187.39
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	177.64
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	152.09
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	137.68

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.