Gene detail

Detailed information of g22.t1 in Acropora digitifera

Genomic Location: chr1Alt:323428...329705
NR annotation: XP_015761926.1, PREDICTED: anion exchange protein 3-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g22.t1

ATGTTTCCCAATCAGGGTTCAAAGATAAGCTCAACTCACTCATTTCACGAAGGCTTCGTGGAATTAGAAGAACTCGTCTTCACACAGAATAAAGACTTAGTTTGGAAAGAGCGTGCTCGATGGATTAAACTAGAAGAGGATGTGGAGGAAAGTGCGAACCGGTGGGGAAAACCTCATATCCCTTGCCTAACGTTCCGCAGTTTGAAAGAAGTCGAGAGAAGTGTACGGGATGGTATCCTCATTCTGGATCTCGAGACAGGCGACCTGCCGACAATTTGCGAAACTATTATTTGGGAAATGAGATCATCAAAAAGATTGTCGAAAGATGAATGCGATGCTGTTAGAATGGTTCTTTTAACAAGGCATGAACATCAGTATCAGAAAAGAAAAGTCCGCGCCAAAGACACTAACCTTCGTATTTCACGGACAGTGCCACAAGTACAGCGTCAACGAGCGGCCACGAATACGCGAGCGAGTTTCTTGCAAACTTTGCGTGAAAATGCAAGTGCTTCTTTACCAAATGTTGCTGTCCGGAGCAGCTCGCAACTTTCTGCAAGATGTTCCAACGACAATGCCACAGATAAAGCCATTACCGATTTTCCAGTTCCTGTGGCTGGTCATTTCTTGAGAGATCACATAGGAGATGGGGACCGAGAAGGAAACGAGACAAGGGAGTCCGATATAAGGGGAAGACTTCCTGCCAATGCACAAGCTACAACTGTATTGGTTGGAGGTCACGAGAGGTTATCATGTGTAGTCAGTGCTTTTATTCGATTCGACACTGGCTGTGATTTGGGTGACTTAGCCGAAGTCAGCATTCCTGTTAGATTCATGTTTATTATGCTTGGACCGGAGGACCTGACTTTAGATTATCACGAAGCAGGACGCGCTGTTGCAACGCTGATGTCCGACAAAGTCTTTCTGGAGTCAGCTTATCACGCGCAGAGCCGACAGGACTTGCTCGATTCCCTCGCTAGTTTTCTGAATGACAGCGTTATTATCCCACCAGGGGAATGGGACCGAAATCTACTTACACAGACCGTACGTTCATTGGCAGGGCAATCCAAACAATTGGCTTTGACCAGACGCCAGCGCGGAGGGGTAAACAAAGACAATGTAGAAGAGAACGCACTTCGAGAAGTGCCCCAAGAAACTTTAGACGATCCTTTTTCAAGAACGGGGAAATTTTGTGGCGGTCTCGTTCGAGACATCAAGAGGCGCTTGCCATTTTATGCGAGCGATTTTACAGATGCATTGGACGTACAATCTATACGTACAATCATTTTCGTGTACTTTGCCTGTCTCGCTCCTGCAGTTGCTTTCGGCGGTTTGTTGAGTGAACAAACCCATAGATGGATGGGCGTGTCGGAAATGATCTTTGCGACGTCATTGTCCGGAGTTGTCTTCTCACTCTTTGCAGGGCAGCCTCTTATCATCATCGGGCCAACAGGTCCTCTTCTAGTCTTTGAAAAAAGCACTTTACACCTTTGCGATCATTATGGCATTGAATTTCTACCTTGGCGCGCATGGCTTGGAGTCTGGGTCATGATTATTTGCTTCGTAATCGTGGCGTTTGAGGGATGTTTTCTCATCAATTATTTTACACGATTCACAGAGGAAATCTTTGCCTTGATGATATCCATTATTTTCATCTATGACGCCATCTTCTACTTGATAAAGATCTTTGCCAATTTTCCTGTACAAGATGATGACAACCCTGTTGGAAATTTAGAAAACGAATCGACCTCAAACACCGCACTGTTCTCTTTAATTTTGATGGTAGGGACCTTTTTTGTGGCTTATAGTTTACGGAAATTACGACACAGCCAGTTTTTTGGGCCGAAAACGCGACACATAGTCAGTGATTTTGGAGTCTTCTTCGCTATCGTTGCCATGGTGATGCTGGATTGGCTGACGGAAGGAATCTACACTGAAAAATTGCAAGTCCCGGATGGACTATCCGTGACGTCACCCAACAGACACACCTGGTTCATAAATCCCATGGGAGTCGACCAACCAATGAAAGCCGGTTCAATCTTTGCGGCGTTCGTCCCTGCTACTCTTGTTAGCATCTTGATTTTTATGGAAGTCGAATTCACGGGAGTCATCTTAGACAAGAAGAATCATAACCTAAAGAAAGGCGTCGGATACAACTTAGACCTCTTCGTGTTGGGTTTGTTGGTTGGCTTGTGCTCTATCCTTGGTCTTCCATGGATGTGTGCCACACCTGTTCACACGTTGTCCCACTTTCATGCGCTAAAAGTTATGAGTACTAACCACGCTCCAGGAGAGCACGCTCGTCTTCTAGAGGTCAAGGAACAACGCCTCACAAATATAATCATTCATCTTCTAATAGGTTTTTCAGTTCTGCTGTCCCCTGTGTTGCGATTGATTCCAATCTCCGTTTTGTTCGGAGTTTTTCTTTTCCTCGGTGTGTCCTCAATGTCGCACATCCAGTTAGTGCAGCGTATAAAATTGCTATTCATCCCAGCTTCGCTTCATCCAGACGAAAAGTATGTAACGAACGTCAAAACAAGCAAGATGCACATTTTTACAATCATACAAGTGTTCTGTGTTTGCGCGTTGGTGATCATGAAACTAACCGAGGCCGCACCAGCTTTTCCTTTTCTCATCATCTGCATGATACCGCTGCGGAAGTTATTAGCGCGAGTTTTCACTGGCAAAGAGCTTGAGGCTTTGGACACCGAAGTGGAAGATGTCTACGACAGCGATATGGACGAATATGATTCAATCCATGTTCCCATATGA

Transcript

chr1Alt.g22.t1

ATAATTGCTCCGGATGAATTGGCCTCCTTTTCGGAATGAAGAGCACGCTACAACTGCGCACGAGCAATGGATCAAAATTAATGACGTCATAATAACCTTGCTCAGGCTTGCGATGACGAATATTATGACAAAGTTTCGGCAAATTTGTAGGATTTTTCTACCGTTATGAAATGTTTCCCAATCAGGGTTCAAAGATAAGCTCAACTCACTCATTTCACGAAGGCTTCGTGGAATTAGAAGAACTCGTCTTCACACAGAATAAAGACTTAGTTTGGAAAGAGCGTGCTCGATGGATTAAACTAGAAGAGGATGTGGAGGAAAGTGCGAACCGGTGGGGAAAACCTCATATCCCTTGCCTAACGTTCCGCAGTTTGAAAGAAGTCGAGAGAAGTGTACGGGATGGTATCCTCATTCTGGATCTCGAGACAGGCGACCTGCCGACAATTTGCGAAACTATTATTTGGGAAATGAGATCATCAAAAAGATTGTCGAAAGATGAATGCGATGCTGTTAGAATGGTTCTTTTAACAAGGCATGAACATCAGTATCAGAAAAGAAAAGTCCGCGCCAAAGACACTAACCTTCGTATTTCACGGACAGTGCCACAAGTACAGCGTCAACGAGCGGCCACGAATACGCGAGCGAGTTTCTTGCAAACTTTGCGTGAAAATGCAAGTGCTTCTTTACCAAATGTTGCTGTCCGGAGCAGCTCGCAACTTTCTGCAAGATGTTCCAACGACAATGCCACAGATAAAGCCATTACCGATTTTCCAGTTCCTGTGGCTGGTCATTTCTTGAGAGATCACATAGGAGATGGGGACCGAGAAGGAAACGAGACAAGGGAGTCCGATATAAGGGGAAGACTTCCTGCCAATGCACAAGCTACAACTGTATTGGTTGGAGGTCACGAGAGGTTATCATGTGTAGTCAGTGCTTTTATTCGATTCGACACTGGCTGTGATTTGGGTGACTTAGCCGAAGTCAGCATTCCTGTTAGATTCATGTTTATTATGCTTGGACCGGAGGACCTGACTTTAGATTATCACGAAGCAGGACGCGCTGTTGCAACGCTGATGTCCGACAAAGTCTTTCTGGAGTCAGCTTATCACGCGCAGAGCCGACAGGACTTGCTCGATTCCCTCGCTAGTTTTCTGAATGACAGCGTTATTATCCCACCAGGGGAATGGGACCGAAATCTACTTACACAGACCGTACGTTCATTGGCAGGGCAATCCAAACAATTGGCTTTGACCAGACGCCAGCGCGGAGGGGTAAACAAAGACAATGTAGAAGAGAACGCACTTCGAGAAGTGCCCCAAGAAACTTTAGACGATCCTTTTTCAAGAACGGGGAAATTTTGTGGCGGTCTCGTTCGAGACATCAAGAGGCGCTTGCCATTTTATGCGAGCGATTTTACAGATGCATTGGACGTACAATCTATACGTACAATCATTTTCGTGTACTTTGCCTGTCTCGCTCCTGCAGTTGCTTTCGGCGGTTTGTTGAGTGAACAAACCCATAGATGGATGGGCGTGTCGGAAATGATCTTTGCGACGTCATTGTCCGGAGTTGTCTTCTCACTCTTTGCAGGGCAGCCTCTTATCATCATCGGGCCAACAGGTCCTCTTCTAGTCTTTGAAAAAAGCACTTTACACCTTTGCGATCATTATGGCATTGAATTTCTACCTTGGCGCGCATGGCTTGGAGTCTGGGTCATGATTATTTGCTTCGTAATCGTGGCGTTTGAGGGATGTTTTCTCATCAATTATTTTACACGATTCACAGAGGAAATCTTTGCCTTGATGATATCCATTATTTTCATCTATGACGCCATCTTCTACTTGATAAAGATCTTTGCCAATTTTCCTGTACAAGATGATGACAACCCTGTTGGAAATTTAGAAAACGAATCGACCTCAAACACCGCACTGTTCTCTTTAATTTTGATGGTAGGGACCTTTTTTGTGGCTTATAGTTTACGGAAATTACGACACAGCCAGTTTTTTGGGCCGAAAACGCGACACATAGTCAGTGATTTTGGAGTCTTCTTCGCTATCGTTGCCATGGTGATGCTGGATTGGCTGACGGAAGGAATCTACACTGAAAAATTGCAAGTCCCGGATGGACTATCCGTGACGTCACCCAACAGACACACCTGGTTCATAAATCCCATGGGAGTCGACCAACCAATGAAAGCCGGTTCAATCTTTGCGGCGTTCGTCCCTGCTACTCTTGTTAGCATCTTGATTTTTATGGAAGTCGAATTCACGGGAGTCATCTTAGACAAGAAGAATCATAACCTAAAGAAAGGCGTCGGATACAACTTAGACCTCTTCGTGTTGGGTTTGTTGGTTGGCTTGTGCTCTATCCTTGGTCTTCCATGGATGTGTGCCACACCTGTTCACACGTTGTCCCACTTTCATGCGCTAAAAGTTATGAGTACTAACCACGCTCCAGGAGAGCACGCTCGTCTTCTAGAGGTCAAGGAACAACGCCTCACAAATATAATCATTCATCTTCTAATAGGTTTTTCAGTTCTGCTGTCCCCTGTGTTGCGATTGATTCCAATCTCCGTTTTGTTCGGAGTTTTTCTTTTCCTCGGTGTGTCCTCAATGTCGCACATCCAGTTAGTGCAGCGTATAAAATTGCTATTCATCCCAGCTTCGCTTCATCCAGACGAAAAGTATGTAACGAACGTCAAAACAAGCAAGATGCACATTTTTACAATCATACAAGTGTTCTGTGTTTGCGCGTTGGTGATCATGAAACTAACCGAGGCCGCACCAGCTTTTCCTTTTCTCATCATCTGCATGATACCGCTGCGGAAGTTATTAGCGCGAGTTTTCACTGGCAAAGAGCTTGAGGCTTTGGACACCGAAGTGGAAGATGTCTACGACAGCGATATGGACGAATATGATTCAATCCATGTTCCCATATGAATCCATGAAATATTTGAATTAAGACCTAGTAACCTGGACCCTTTTTTTTTTCAGAGTAACAAATACAAGTTTATGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P16283	Anion exchange protein 3 OS=Mus musculus OX=10090 GN=Slc4a3 PE=1 SV=2
P23348	Anion exchange protein 3 OS=Rattus norvegicus OX=10116 GN=Slc4a3 PE=1 SV=1
P48751	Anion exchange protein 3 OS=Homo sapiens OX=9606 GN=SLC4A3 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00955 all species →	HCO3_cotransp	HCO3- transporter family	Family	Interproscan
PF07565 all species →	Band_3_cyto	Band 3 cytoplasmic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016152 all species →	Homologous_superfamily	Phosphotransferase/anion transporter	Interproscan
IPR001717 all species →	Family	Anion exchange protein	Interproscan
IPR003020 all species →	Family	Bicarbonate transporter, eukaryotic	Interproscan
IPR011531 all species →	Domain	Bicarbonate transporter-like, transmembrane domain	Interproscan
IPR013769 all species →	Domain	Band 3 cytoplasmic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11453 all species →	ANION EXCHANGE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005452 all species →	Molecular Function	solute:inorganic anion antiporter activity	Interproscan
GO:0006820 all species →	Biological Process	monoatomic anion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015701 all species →	Biological Process	bicarbonate transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0050801 all species →	Biological Process	monoatomic ion homeostasis	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0008509 all species →	Molecular Function	monoatomic anion transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13856	SLC4A3, AE3; solute carrier family 4 (anion exchanger), member 3	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g22.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

19TPM > 0

1Conditions

1.1Max TPM

0.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	19	0.39	1.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	1.13
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	1.09
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	1.06
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	0.99
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	0.94
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	0.92
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	0.91
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	0.86
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	0.85
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	0.84
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	0.72
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	0.71
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	0.67
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	0.65
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	0.63
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	0.62
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	0.58
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	0.47
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	0.44
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.