Gene detail

Detailed information of g22.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_022791316.1, piggyBac transposable element-derived protein 4-like isoform X1 [Stylophora pistillata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96DM1	PiggyBac transposable element-derived protein 4 OS=Homo sapiens OX=9606 GN=PGBD4 PE=1 SV=3
Q8N328	PiggyBac transposable element-derived protein 3 OS=Homo sapiens OX=9606 GN=PGBD3 PE=1 SV=3
P0DP91	Chimeric ERCC6-PGBD3 protein OS=Homo sapiens OX=9606 GN=ERCC6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000014 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000047 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000222 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001083 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001976 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003372 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004815 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007154 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0011690 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0019072 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0028152 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01212 all species →	Beta_elim_lyase	Beta-eliminating lyase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF03366 all species →	YEATS	YEATS family	Domain	Interproscan
PF17793 all species →	AHD	ANC1 homology domain (AHD)	Domain	Interproscan
PF14291 all species →	DUF4371	Domain of unknown function (DUF4371)	Family	Interproscan
PF13843 all species →	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF03564 all species →	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF06041 all species →	DUF924	Bacterial protein of unknown function (DUF924)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR011166 all species →	Family	Beta-eliminating lyase family	Interproscan
IPR001597 all species →	Domain	Aromatic amino acid beta-eliminating lyase/threonine aldolase	Interproscan
IPR008276 all species →	Family	Concentrative nucleoside transporter	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR044539 all species →	Family	Pachytene checkpoint protein 2-like	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005033 all species →	Family	YEATS	Interproscan
IPR052790 all species →	Family	YEATS domain-containing	Interproscan
IPR040930 all species →	Domain	AF-9, ANC1 homology domain	Interproscan
IPR038704 all species →	Homologous_superfamily	YEATS superfamily	Interproscan
IPR025398 all species →	Domain	Domain of unknown function DUF4371	Interproscan
IPR029526 all species →	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR005312 all species →	Family	Protein of unknown function DUF1759	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR010323 all species →	Family	Protein of unknown function DUF924	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32325 all species →	BETA-ELIMINATING LYASE-LIKE PROTEIN-RELATED	Interproscan
PTHR10590 all species →	SODIUM/NUCLEOSIDE COTRANSPORTER	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR45991 all species →	PACHYTENE CHECKPOINT PROTEIN 2	Interproscan
PTHR47827 all species →	AHD DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46599 all species →	PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4	Interproscan
PTHR10024 all species →	SYNAPTOTAGMIN	Interproscan
PTHR46704 all species →	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009072 all species →	Biological Process	aromatic amino acid metabolic process	Interproscan
GO:0016830 all species →	Molecular Function	carbon-carbon lyase activity	Interproscan
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0016829 all species →	Molecular Function	lyase activity	Interproscan
GO:0005337 all species →	Molecular Function	nucleoside transmembrane transporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015293 all species →	Molecular Function	symporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:1901642 all species →	Biological Process	nucleoside transmembrane transport	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0007131 all species →	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0051598 all species →	Biological Process	meiotic recombination checkpoint signaling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0008023 all species →	Cellular Component	transcription elongation factor complex	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0070577 all species →	Molecular Function	lysine-acetylated histone binding	Interproscan
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0001786 all species →	Molecular Function	phosphatidylserine binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005544 all species →	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0014059 all species →	Biological Process	regulation of dopamine secretion	Interproscan
GO:0017156 all species →	Biological Process	calcium-ion regulated exocytosis	Interproscan
GO:0017158 all species →	Biological Process	regulation of calcium ion-dependent exocytosis	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan
GO:0070382 all species →	Cellular Component	exocytic vesicle	Interproscan
GO:0071277 all species →	Biological Process	cellular response to calcium ion	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15187	MLLT1_3, ENL, AF9; YEATS domain-containing protein 1/3	-	Chromosome and associated proteins	ko03036	deepkoala
K23313	TEN1; CST complex subunit TEN1	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.