Gene detail

Detailed information of g22111.t1 in Montipora capitata

Genomic Location: Sc0001598:22705...45318
NR annotation: XP_044170420.1, LOW QUALITY PROTEIN: adenylate kinase 9-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g22111.t1

atgattgagagaaacatcgttcctgatgaagtgatttacttgaaagatgacagtgacagcggcgaatttctgctgaaaagatggtatcaaacaaacaaacaaaatctaaacgaaatgtgggaagctagacgcgttgagcgaaaagctcgtttggaagcagaacgtgccgagaaagaaaggaaagcgaaagaggaagccgcaaggaaggctgccgaggaagccaggaagaaggctgaagaagagagacgtagacaggaagaggctgaggctgaaggagacgagaaggaagagggggaggaagtgacggagaaggaagaagagaaggaggctgaggacggacaggaggttcaggatgaggaaacgaaagaggccgaggaagaagcgaaggaaatttcttccgaggctgaacccaagcctgtcgactcggttgagcttcgaccctcagctgaggacttagttgtaaaactgtctgcgggagaaggcgacttcatcttggagggcgatctgccgcctgccaatgaaccggaaactgaggagttcaagagtctcagagcgaactttgatcgagacttccctcagttgctctctgtactgaaaggaaccaacaacattgatcctatcgtggtgtcggtcgagagagaaacggaagagatgaacaaggaggttttaaaaacagttgaagctccatttaattatcgcggttgggaatacaccggcatggaccaagacgaggaagaagaagacttcggcgaagatgaagaagacgaggaggaggaagaagaagacatttacgccaaagacaagaaaaagatctttggtgatacaagccattactgcccagtaatgttaaaagatagatatgttttgtggccgggtattgttgaatgcgccgcaaagtatcgtgagcgaacttatttcttctcatccactgatgccagggctacatttctggcagatccaaacagttatctcccgataaacagacctcttgagcctcctccaattcgtctcttaattcttggccccaaaggagcgggtaaaactctgcacggccgccaattagcaaagcaaatcggcgtgttccacatttcattcaaggagcgtctgcaagaattgatcattgctaagaccaagaaaaagataggacccgaatatgatgacgatgaggatgaaaccggtgaacaagccgtcacggctccggaaggacttgaagggactgatgcagaaaatgctccaaaagaaaaggaaggggaggacgatggagaaggcgaagaagggactgaggccgagacagaggctgaaactgaacctgaacccgaactgacggatgaagaagaaagcattcgtgcaaatttagctgagggtgagccacttccaaatgaaactttggacaagattctgccaccattttggaacgaagagccgtttaggtccacagggtttatcttggagggtttccctcgcactgaagctgaggctcgttacctagcaacctcgggcttgtttcctgacctcgccgttattctgggagtggaagatactgaaattgtggatagacttttaccaccgctgcttgaaaagtggcgtaaaaagcgagacaaacgcgaggcggagaaagaaagacagcgtgctttagccacgaaacagaaggcttacagatcgcaaagggatagcgaagacagcgaagaagatccagatgaagatgatgacgaagaagacatcgaagcttttcttgacgccgaggaagaggaggaagacgaagaattagaagacgaagaagaagaaaccgaggaagatgctgtcgagcgactcaaaactgagattggcgaacgatatgatgaggagactggaaaagtagctatagtacaggagacgctagaagaaatctcaattcctcgaggagagataaatggtggacgaaagccccggattgtggagtactgcattaagaaagttctcaaaccagttgtggacttccgggaaagcctgtttgaccggtgcttcgcaatcgatgggtaccttgccaataaaatgcttattacgggatacaaatttccaagccgttttggaagatggtgtcctgtcaagctcctggagggcgaagttctccctcctcagtacggctttggtgatcacacctttcctgtagtgtatcgacaacatgtgtacttttgctcgggacgtgaccagcgggacatgttcatgcagtgtccgtctcgttacttgaaacaatcttctcctaaacccgtcgttcccatcaaaatggccattcttggacctccaaagtctggaaaaactggattggctaaccgttttgtggccgagtacggggttgtaagattatccatcggtgaggcaataagaaaaatcctgaatttccagccatatacagaactcgcaagacaaataaagctgcaccttagagctggtatgactgtgccggatgaactggcagtgcaggccttagaagtggcattactggacatgcagtgtcagactcgaggttacatacttgatggctatccagtcaccagaagacaagtcgagctaatgaccgagcgaaagattatacctgtcagagtgctggagctacaagttgatgataaggagttgttgaggcgtggaatggctgatcttcatgcgcctacaagggttcttcctctgcacgacagcttacagattctcggtatacgggtcaatgcttggaggcgggaaattgcggacgtgagagagtggtatcaaaaggaatacagaaactgggtagcagcagatggtcagcgatccaagtggtgggtgtggaaccaagccttggatgaagccaggaaaagtgttaggcagattcaaacttacttgcagagattatcggaaggtaaatcggcctctatagccgacatgtgtgttacgcctagtgagtgcttagtgcgtttgggggattttggccaatattgtcccgtcagccttgctgaccgcggagaactggtagattgttccgtcaacccgtcattagagttcgctgctgagttttgcgggcgttattacaaaatggcgtccagagtggagttggaacactttcttgcggaccccgctcgttacgtgccacctttggcccccaaaaagctgcccccgcccgaacgcctgccgaagagaaggacagaagctgaagtgaaggccctttttccgaaacaaatcgaactgaaggggtactgtccagtcacgttcttggatggcaagctaagatacgaaaacatcgtgcctggggaaacagatttggtggtggagtacagagaaaagctcttttgcttcgagtcggaagacaaactgcaacaatttatgagactaccggagaagtatttcggtcttactttaccccacaagttaccaccgcgaaaggagccgatgcttgtaagtggactgcccatgttgggttacatggagcagagtgtggccacggcgctgaccaaggcattgactgctgttggctgctttaaacccaaatacccttttgtggacgccaagagatctgcccttctttacatagcctaccaccttaaagcctacaacccaaagagcagcgactacattcgcaaaaagtacaagcagaagttgatgcgattcgaggaggagtgcgaactgattggttaccttggtaaagagatgacgaatcgttatcgagaaccagaggagctaccaattgacttcgatcataaattgacaactttccttgcactcaaagacattgaacctacagccacatggtgtgcgtga

Transcript

g22111.t1

ATGATTGAGAGAAACATCGTTCCTGATGAAGTGATTTACTTGAAAGATGACAGTGACAGCGGCGAATTTCTGCTGAAAAGATGgtatcaaacaaacaaacaaaATCTAAACGAAATGTGGGAAGCTAGACGCGTTGAGCGAAAAGCTCGTTTGGAAGCAGAACGTgccgagaaagaaaggaaagcgaAAGAGGAAGCCGCAAGGAAGGCTGCCGAGGAAGCCAGGAAGAAGGCTGAAGAAGAGAGACGTAGACAGGAAGAGGCTGAGGCTGAAGGAGACGAGAAGGAAGAGGGGGAGGAAGTGACGGAGAAGGAAGAAGAGAAGGAGGCTGAGGACGGACAGGAGGTTCAGGATGAGGAAACGAAAGAGGCCGAGGAAGAAGCGAAGGAAATTTCTTCCGAGGCTGAACCCAAGCCTGTCGACTCGGTTGAGCTTCGACCCTCAGCTGAGGACTTAGTTGTAAAACTGTCTGCGGGAGAAGGCGACTTCATCTTGGAGGGCGATCTGCCGCCTGCCAATGAACCGGAAACTGAGGAGTTCAAGAGTCTCAGAGCGAACTTTGATCGAGACTTCCCTCAGTTGCTCTCTGTACTGAAAGGAACCAACAACATTGATCCTATCGTGGTGTCGGTCGAGAGAGAAACGGAAGAGATGAACAAGGAGGTTTTAAAAACAGTTGAAGCTCCATTTAATTATCGCGGTTGGGAATACACCGGCATGGACCAAGACGAGGAAGAAGAAGACTTCGGCGAAGATGAAGAAGACgaggaggaggaagaagaagacATTTACGCCAAAGACAAGAAAAAGATCTTTGGTGATACAAGCCATTACTGCCCAGTAATGTTAAAAGATAGATATGTTTTGTGGCCGGGTATTGTTGAATGCGCCGCAAAGTATCGTGAGCGAACTTATTTCTTCTCATCCACTGATGCCAGGGCTACATTTCTGGCAGATCCAAACAGTTATCTCCCGATAAACAGACCTCTTGAGCCTCCTCCAATTCGTCTCTTAATTCTTGGCCCCAAAGGAGCGGGTAAAACTCTGCACGGCCGCCAATTAGCAAAGCAAATCGGCGTGTTCCACATTTCATTCAAGGAGCGTCTGCAAGAATTGATCATTGCTAAGACCAAGAAAAAGATAGGACCCGAATATGATGACGATGAGGATGAAACCGGTGAACAAGCCGTCACGGCTCCGGAAGGACTTGAAGGGACTGATGCAGAAAATGCTCCAAAAGAAAAGGAAGGGGAGGACGATGGAGAAGGCGAAGAAGGGACTGAGGCCGAGACAGAGGCTGAAACTGAACCTGAACCCGAACTGACggatgaagaagaaagcattcgTGCAAATTTAGCTGAGGGTGAGCCACTTCCAAATGAAACTTTGGACAAGATTCTGCCACCATTTTGGAACGAAGAGCCGTTTAGGTCCACAGGGTTTATCTTGGAGGGTTTCCCTCGCACTGAAGCTGAGGCTCGTTACCTAGCAACCTCGGGCTTGTTTCCTGACCTCGCCGTTATTCTGGGAGTGGAAGATACTGAAATTGTGGATAGACTTTTACCACCGCTGCTTGAAAAGTGGCGTAAAAAGCGAGACAAACGCGAGGCGGAGAAAGAAAGACAGCGTGCTTTAGCCACGAAACAGAAGGCTTACAGATCGCAAAGGGATAGCGAAGACAGCGAAGAAGATCcagatgaagatgatgacgaaGAAGACATCGAAGCTTTTCTTGACGCcgaggaagaggaggaagacgAAGAAttagaagacgaagaagaagaaaccgAGGAAGATGCTGTCGAGCGACTCAAAACTGAGATTGGCGAACGATATGATGAGGAGACTGGAAAAGTAGCTATAGTACAGgAGACGCTAGaagaaatctcaattcctcgaGGAGAGATAAATGGTGGACGAAAGCCCCGGATTGTGGAGTACTGCATTAAGAAAGTTCTCAAACCAGTTGTGGACTTCCGGGAAAGCCTGTTTGACCGGTGCTTCGCAATCGATGGGTACCTTGCCAATAAAATGCTTATTACGGGATACAAATTTCCAAGCCGTTTTGGAAGATGGTGTCCTGTCAAGCTCCTGGAGGGCGAAGTTCTCCCTCCTCAGTACGGCTTTGGTGATCACACCTTTCCTGTAGTGTATCGACAACATGTGTACTTTTGCTCGGGACGTGACCAGCGGGACATGTTCATGCAGTGTCCGTCTCGTTACTTGAAACAATCTTCTCCTAAACCCGTCGTTCCCATCAAAATGGCCATTCTTGGACCTCCAAAGTCTGGAAAAACTGGATTGGCTAACCGTTTTGTGGCCGAGTACGGGGTTGTAAGATTATCCATCGGTGAGGCAATAAGAAAAATCCTGAATTTCCAGCCATATACAGAACTCGCAAGACAAATAAAGCTGCACCTTAGAGCTGGTATGACTGTGCCGGATGAACTGGCAGTGCAGGCCTTAGAAGTGGCATTACTGGACATGCAGTGTCAGACTCGAGGTTACATACTTGATGGCTATCCAGTCACCAGAAGACAAGTCGAGCTAATGACCGAGCGAAAGATTATACCTGTCAGAGTGCTGGAGCTACAAGTTGATGATAAGGAGTTGTTGAGGCGTGGAATGGCTGATCTTCATGCGCCTACAAGGGTTCTTCCTCTGCACGACAGCTTACAGATTCTCGGTATACGGGTCAATGCTTGGAGGCGGGAAATTGCGGACGTGAGAGAGTGGTATCAAAAGGAATACAGAAACTGGGTAGCAGCAGATGGTCAGCGATCCAAGTGGTGGGTGTGGAACCAAGCCTTGGATGAAGCCAGGAAAAGTGTTAGGCAGATTCAAACTTACTTGCAGAGATTATCGGAAGGTAAATCGGCCTCTATAGCCGACATGTGTGTTACGCCTAGTGAGTGCTTAGTGCGTTTGGGGGATTTTGGCCAATATTGTCCCGTCAGCCTTGCTGACCGCGGAGAACTGGTAGATTGTTCCGTCAACCCGTCATTAGAGTTCGCTGCTGAGTTTTGCGGGCGTTAttacaaaatggcgtccagAGTGGAGTTGGAACACTTTCTTGCGGACCCCGCTCGTTACGTGCCACCTTTGGCCCCCAAAAAGCTGCCCCCGCCCGAACGCCTGCCGAAGAGAAGGACAGAAGCTGAAGTGAAGGCCCTTTTTCCGAAACAAATCGAACTGAAGGGGTACTGTCCAGTCACGTTCTTGGATGGCAAGCTAAGATACGAAAACATCGTGCCTGGGGAAACAGATTTGGTGGTGGAGTACAGAGAAAAGCTCTTTTGCTTCGAGTCGGAAGACAAACTGCAACAATTTATGAGACTACCGGAGAAGTATTTCGGTCTTACTTTACCCCACAAGTTACCACCGCGAAAGGAGCCGATGCTTGTAAGTGGACTGCCCATGTTGGGTTACATGGAGCAGAGTGTGGCCACGGCGCTGACCAAGGCATTGACTGCTGTTGGCTGCTTTAAACCCAAATACCCTTTTGTGGACGCCAAGAGATCTGCCCTTCTTTACATAGCCTACCACCTTAAAGCCTACAACCCAAAGAGCAGCGACTACATTCGCAAAAAGTACAAGCAGAAGTTGATGCGATTCGAGGAggagtgcgaactgattggttacCTTGGTAAAGAGATGACGAATCGTTATCGAGAACCAGAGGAGCTACCAATTGACTTCGATCATAAATTGACAACTTTCCTTGCACTCAAAGACATTGAACCTACAGCCACATGGTGTGCGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5TCS8	Adenylate kinase 9 OS=Homo sapiens OX=9606 GN=AK9 PE=1 SV=2
G3UYQ4	Adenylate kinase 9 OS=Mus musculus OX=10090 GN=Ak9 PE=2 SV=2
Q8AVD3	Adenylate kinase 2, mitochondrial OS=Xenopus laevis OX=8355 GN=ak2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003750 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00406 all species →	ADK	Adenylate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000850 all species →	Family	Adenylate kinase/UMP-CMP kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23359 all species →	NUCLEOTIDE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004017 all species →	Molecular Function	adenylate kinase activity	Interproscan
GO:0004127 all species →	Molecular Function	(d)CMP kinase activity	Interproscan
GO:0004550 all species →	Molecular Function	nucleoside diphosphate kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0006165 all species →	Biological Process	obsolete nucleoside diphosphate phosphorylation	Interproscan
GO:0019205 all species →	Molecular Function	nucleobase-containing compound kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18533	AK9; adenylate/nucleoside-diphosphate kinase	EC:2.7.4.3 EC:2.7.4.6	Pyrimidine metabolism	ko00240	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g22111.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

165.0Max TPM

40.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	40.70	153.86
whole organisms · low pH treatment	15	15	40.05	153.45
whole organisms · extra low pH treatment pH treatment	12	12	41.73	164.95

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	153.86
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	125.94
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	115.57
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	84.20
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	83.32
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	71.72
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	70.01
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	24.95
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	22.92
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	21.29
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	21.06
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	21.04
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	20.49
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	3.17
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	2.96
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	2.77
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	2.53
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	1.82
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	1.75
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	1.70
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	1.61
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	153.45
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	151.93
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	150.61
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	26.95
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	24.14
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	21.98
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	19.47
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	19.16
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	19.02
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	3.46
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	2.51
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	2.50
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	1.98
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	1.88
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	1.63
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	164.95
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	126.90
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	120.57
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	20.14
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	19.56
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	19.46
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	18.91
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	2.55
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	2.13
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	2.07
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	2.03
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	1.50

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.