Gene detail

Detailed information of g2218.t1 in Montipora capitata

Genomic Location: Sc0000032:316868...340104
NR annotation: XP_029188068.2, exocyst complex component 1-like isoform X2 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2218.t1

atggcggccatcaagcacaacttgcaaagggatgtctttaaacccagcgaagagcgactgtatgcctttgttagcgtgacaaaagtgggaaagaaaaagaaagcaagttttctttgtgtggctgtgactatggtgaagccagaaaccgtatccatttatcaagttaaaaagactgagaaagagacatataagaagaagcgaacaaattggagattgaaggatctcaagctcattgatggcaaagatgaaactaatgaaaatccagagtttcacctccatttcgacaagacgtacaagtgggttgcaagcagtgtacaggacaaaaacaacttcattcttgcactttggaagttatgcgaaaggcatctgacgcagaggaagccaactttgttgcatgttagagggattgatgatggctttcatggtggagagagcattagagctcagcagcatacagatgaaggttctgaaggtgaagattatcaggagttaacacagcgagaagagaacgacttggaatatatgatttctcagactgaaaatgccatcagcaacatcgaagctttcacagaacagctctccaaggatctatcagttttagatggggccaatattcattccatcatggatgcagagccacaggttgaatcgttaatgcagttgttgaatgatgctttgaatgagcttgatcatttggatacacggcttactggctatgataccatgctcagaggggtacgtgctcaaatggaacaaatggaggacaaggataaacatatggtaacagagagcagaaaccgcaagatgctcttggaagaagttgcaacattagtgggtattttggatgttcctgagggtaaccttttagcccttcagaatgctgatctatccaaaggagtgggacttagagagagcacacaggctgcttttgttgtacttcacgcactgcaggctgatttgagtcccggtttaactaaaatgagagccgtggaggaacagagagaaagattttggcagattagcagtgattttgctcagcgcttgaaatttcatcttattgaaatatttcagcggcatggtgcagacgttgagggcactgtacaacaataccccagtgaactgtgtcttcctaaacattctgcttgtcataatgacctggcgccatattctgaacttatgaagtggctgaaagaagtagatcaggaggtgtttaaggagctctgtcaggcctactctcagtccctcagcaaggtgtatgaaagagaattgagggatttctttgagggagttaaacagcgtaccttaaccaagggagtcagaacttacactgccttccggatgacagggtcttcagcagtaaatgatccgaaaatgagcccacgtcctacgcctcgcaggggctcattgagacaacgagaaaaggcacaggaacgaaaggacctcgactcgtattctattggctcggattcaagatcaagatcaggttccatgagttctgtggattcctctgatcagctgcaggaaggaagagtaaaatttgaaaaggtgtttgatatccttttaatggaactggagccggtctgcacagctgaacaggagtttgttcaaaagttctttgactttacattggttgaacttgagccctcctctgattcatccagcagcacagttggaatggactgttctgatggagcaatgtctagcaaagccgcatcaccaagatctacagacgcaacggatgtgaaggaaagaatgcctttgagtgaagaagtcagtaacaccatgtacatgttagtcaagattggccattttgtaatcacaactcagctgtctggatctcctgtgtcttacctcagtcaacagcttggcaactgcctcatctccgtgaagagactctttgacaagtttatatcaagcctgaagaaacaaattgaggacatgaagattcaaaagacgaagaagtgtggaattttaccatttgtgacaaaatttgaggaatttgcagttatttcagaaagcgtgtttaagaactctgatcgccgcacagatctcgataaagcttaccaccaactgattcgagttgtgtttgtaaacgtggagcgaatggctgaagaacatcaaaaaacaccaagggcagtggttatgatgggggtgctgagtcgtttaaagataatatgcctggagaacgaaaagagagaggcaaagaagaaatatctggatagtcaaaagatgtacgtcagtgaaatgctgggaagacccatggagaaactgaatatcttttttgagggtgttcaggattgtatagcagcaggcgtgaaagaagacgaggtgggatatcaactggcgttcagtaagcaagaactaaggaagtgcatcaaagagtaccctgccaaagagctaaagaaaggattggaacagttatacaaaaaggttgagaagcacttgtgtgaagaggagaatctgctgcaggttgtgtggcattctatgcaggatgaatttattcagcagtacaagcactttgatgatctcattcagcgatgttaccccggatcgatgatcaatatcgaagtctcaattaacgatatcttgtcatatttctcgaacatcgctcagtctcactaa

Transcript

g2218.t1

ATGGCGGCCATCAAGCACAACTTGCAAAGGGATGTCTTTAAACCCAGCGAAGAGCGACTGTATGCCTTTGTTAGCGTGACAAAAGtgggaaagaaaaagaaagcaagtTTTCTTTGTGTGGCTGTGACTATGGTGAAGCCAGAAACCGTATCCATTTATCAAGTTAAAAAGACTGAGAAAGAGACATATAAGAAGAAGCGAACAAATTGGAGATTGAAGGATCTCAAGCTCATTGATGGCAAAGATGAAACTAATGAAAATCCAGAGTTTCACCTCCATTTCGACAAGACGTACAAGTGGGTTGCAAGCAGTGTACAGGACAAAAACAACTTCATTCTTGCACTTTGGAAGTTATGCGAAAGGCATCTGACGCAGAGGAAGCCAACTTTGTTGCATGTTAGAGGGATTGATGATGGCTTTCATGGTGGAGAGAGCATTAGAGCTCAGCAGCATACAGATGAAGGTTCTGAAGGTGAAGATTATCAGGAGTTAACACAGCGAGAAGAGAACGACTTGGAATATATGATTTCTCAGACTGAAAATGCCATCAGCAACATCGAAGCTTTCACAGAACAGCTCTCCAAGGATCTATCAGTTTTAGATGGGGCCAATATTCATTCCATCATGGATGCAGAGCCACAGGTTGAATCGTTAATGCAGTTGTTGAATGATGCTTTGAATGAGCTTGATCATTTGGATACACGGCTTACTGGCTATGATACCATGCTCAGAGGGGTACGTGCTCAAATGGAACAAATGGAGGACAAGGATAAACATATGGTAACAGAGAGCAGAAACCGCAAGATGCTCTTGGAAGAAGTTGCAACATTAGTGGGTATTTTGGATGTTCCTGAGGGTAACCTTTTAGCCCTTCAGAATGCTGATCTATCCAAAGGAGTGGGACTTAGAGAGAGCACACAGGCTGCTTTTGTTGTACTTCACGCACTGCAGGCTGATTTGAGTCCCGgTTTAACTAAAATGAGAGCCGTGGAGGAACAGAGAGAAAGATTTTGGCAGATTAGCAGTGATTTTGCTCAGCGCTTGAAATTTCATCTTATTGAAATATTTCAGCGGCATGGTGCAGACGTTGAGGGCACTGTACAACAATACCCCAGTGAACTGTGTCTTCCTAAACATTCTGCTTGTCATAATGACCTGGCGCCATATTCTGAACTTATGAAGTGGCTGAAAGAAGTAGATCAGGAGGTGTTTAAGGAGCTCTGTCAGGCCTACTCTCAGTCCCTCAGCAAGGTGTATGAAAGAGAATTGAGGGATTTCTTTGAGGGAGTTAAACAGCGTACCTTAACCAAGGGAGTCAGAACTTACACTGCCTTCCGGATGACAGGGTCTTCAGCAGTAAATGATCCGAAAATGAGCCCACGTCCTACGCCTCGCAGGGGCTCATTGAGACAACGAGAAAAGGCACAGGAACGAAAGGACCTCGACTCGTATTCTATTGGCTCGGATTCAAGATCAAGATCAGGTTCCATGAGTTCTGTGGATTCCTCTGATCAGCTGCAGGAAGGAAGAGTAAAATTTGAAAAGGTGTTTGATATCCTTTTAATGGAACTGGAGCCGGTCTGCACAGCTGAACAGGAGTTTGTTCAAAAGTTCTTTGACTTTACATTGGTTGAACTTGAGCCCTCCTCTGATTCATCCAGCAGCACAGTTGGAATGGACTGTTCTGATGGAGCAATGTCTAGCAAAGCCGCATCACCAAGATCTACAGACGCAACGGATGTGAAGGAAAGAATGCCTTTGAGTGAAGAAGTCAGTAACACCATGTACATGTTAGTCAAGATTGGCCATTTTGTAATCACAACTCAGCTGTCTGGATCTCCTGTGTCTTACCTCAGTCAACAGCTTGGCAACTGCCTCATCTCCGTGAAGAGACTCTTTGACAAGTTTATATCAAGCCTGAAGAAACAAATTGAGGACATGAAGATTCAAAAGACGAAGAAGTGTGGAATTTTACCATTTGTGACAAAATTTGAGGAATTTGCAGTTATTTCAGAAAGCGTGTTTAAGAACTCTGATCGCCGCACAGATCTCGATAAAGCTTACCACCAACTGATTCGAGTTGTGTTTGTAAACGTGGAGCGAATGGCTGAAGAACATCAAAAAACACCAAGGGCAGTGGTTATGATGGGGGTGCTGAGTCGTTTAAAGATAATATGCCTGGAGAACGAAAAGAGAGAGGCAAAGAAGAAATATCTGGATAGTCAAAAGATGTACGTCAGTGAAATGCTGGGAAGACCCATGGAGAAACTGAATATCTTTTTTGAGGGTGTTCAGGATTGTATAGCAGCAGGCGTGAAAGAAGACGAGGTGGGATATCAACTGGCGTTCAGTAAGCAAGAACTAAGGAAGTGCATCAAAGAGTACCCTGCCAAAGAGCTAAAGAAAGGATTGGAACAGTTATACAAAAAGGTTGAGAAGCACTTGTGTGAAGAGGAGAATCTGCTGCAGGTTGTGTGGCATTCTATGCAGGATGAATTTATTCAGCAGTACAAGCACTTTGATGATCTCATTCAGCGATGTTACCCCGGATCGATGATCAATATCGAAGTCTCAATTAACGATATCTTGTCATATTTCTCGAACATCGCTCAGTCTCACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R3S6	Exocyst complex component 1 OS=Mus musculus OX=10090 GN=Exoc1 PE=1 SV=4
Q9NV70	Exocyst complex component 1 OS=Homo sapiens OX=9606 GN=EXOC1 PE=1 SV=4
Q9VVG4	Exocyst complex component 1 OS=Drosophila melanogaster OX=7227 GN=Sec3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002314 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09763 all species →	Sec3_CC	Exocyst complex component Sec3, coiled-coil	Repeat	Interproscan
PF15277 all species →	Sec3-PIP2_bind	Exocyst complex component SEC3 N-terminal PIP2 binding PH	Domain	Interproscan
PF20654 all species →	Sec3_C-term	Exocyst complex component Sec3, C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019160 all species →	Domain	Exocyst complex component Sec3, coiled-coil	Interproscan
IPR028258 all species →	Domain	Exocyst complex component Sec3, PIP2-binding N-terminal domain	Interproscan
IPR048628 all species →	Domain	Exocyst complex component Sec3, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16092 all species →	SEC3/SYNTAXIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000145 all species →	Cellular Component	exocyst	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006893 all species →	Biological Process	Golgi to plasma membrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19983	EXOC1, SEC3; exocyst complex component 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2218.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

59.9Max TPM

18.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	18.09	59.94
whole organisms · low pH treatment	15	15	17.63	49.39
whole organisms · extra low pH treatment pH treatment	12	12	19.77	54.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	59.94
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	55.90
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	52.40
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	26.73
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	25.39
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	20.99
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	20.95
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	20.44
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	17.32
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	14.87
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	13.88
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	13.76
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	13.57
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	6.78
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	5.19
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	3.89
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	2.05
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	1.82
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	1.58
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	1.39
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	1.08
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	49.39
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	48.46
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	41.54
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	22.24
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	21.32
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	17.61
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	16.20
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	15.31
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	10.97
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	5.87
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	4.77
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	4.03
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	2.77
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	2.54
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	1.43
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	54.88
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	52.80
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	52.26
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	20.57
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	15.08
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	14.35
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	13.83
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	5.59
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	2.83
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	2.19
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	1.61
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	1.29

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.