Gene detail

Detailed information of g22304.t1 in Acropora digitifera

Genomic Location: chr10Alt:20436975...20447429
NR annotation: XP_029190892.2, smoothened homolog isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr10Alt.g22304.t1

TTGGATTCAATTTTTAAGACAAACTTATGCTTCCTTCTCGATATTTTGCGGGAATGCAATGGCTTCATGTTTTGATATTGCAGCATTGCTTGCTCAAAGCGACAGGGACTAATTACAAATGCGAAACTCTACAGCATCGAAAATGTTTGGGTTCTACCTTGGAGTACAATTTTACAACTTTACAATTGGTCACGGATTCTAGCAATCAAGATCAAGTTCAGTCCAATCTGGAAAAATGGAAAGGCTTAAAATTTCTTTCTAACTGTTGGTCTGTTCTCCAGCCACTTTTGTGCCAAGTGTACATGCCAGAATGCCAAGCCGACGGTTCTGTCCGGTTACCGTGTCGAGAACAGTGTGAAGCCACAAGAGAGCCGTGTTCTGTAGTGGAACGCTACAATAAAAAATGGCCCGACTTTTTACAATGTGCAAACTTTAAGGAAGGCGATTGCAAAGTAAAAGAACTCCAACTCAATGAATCTGCATGCAAACGTCCATTGGTTGAAACATCTCACAAGTCCAGCTGGTATGAAGGAATACAGGGCTGTGGAATTCAATGTGAAAATCCCATTTTTGACAAAGAAGAACACACAAGAATTCACAGATTTGTGGGTGCATTTGGAAGCCTGTCATTTGTATGCAGCCTTTTTACAGTGGTCACATTTTTAATTGGTTGGAAGTCCCAGAATCGCTATCCATCAGTCATTCTGTTTTATATGAACAGTTGTTTCTGTGCTGCTTCCTTGGGTTTCCTTATTCAGTTTACTGACGGTGCAAGAGATCGAACTGTTTGTCGTAAGGATGAAACAATGCGACTGCAAGAACCAAGTGAGGATGACAGTTTCCTTTGCATTCTGACATTTGTCTTGGTATATTACTTCTCCATGGTTGGTGCAGTGTGGTTTGTTATCCTTGCGTACTCGTGGTCTATTTGTTTCAAATCTCTTGGGAGTACTAGGGATAACTTTGTAGGGAAGGTGATATATTTCCATTGCATAGCATGGATTATTCCCCTCACTTGGACCGTCAGCATTCTTGCCCTAAAACAGGTTGATGCTAACTCTCTCAGTGGAATTTGTTTTGTTGGATATAAAAATCCTAAAATGAGAGCTGGTTTTCTGCTGGCACCATTGGGCCTTGACTTGCTCATTGGTGGAATTTTCTTAATATATGGTATGATCACTCTATGTAAGCTACGTAAATCAAATCCCAATTTTCTAAGTAGCAGAGCAGCTCATAAAATAAAGGAAACCATAGTTCGAGTTGGTATATTTTCTGTGATATCATTTTTGACTGTATTTATTACTTTTGCCTGTCATGTTTATGAGTACCATAACCAGCACAAATGGGAGCTGAGTTACATGATGTTTATCGGGTGCATTGCAGAAAAAGCAGCTGATGGTGGGAAATCATGGAATAAAAATGACTGCTCAGTGAGTGACCGTCCCAATCTGGGAATCATTGAGTTGGAGCTGGCCTCTCTATTTGGTACTGGAATCGCAATGAGCAGCTGGACATGGACTTCAAACACACTACAAACATGGCAAAAGTTATGGCGCAGGATAACAAGAAAGAACAGACATCCTGAGCTCAGTCACTACAAAACTATAAGGAGAATGAAGAACAGAGTAGCACCAGCACTTCTTTACCCTGCCATACCAGATGTACAAATGGATGCAGTTATGAAGGCAGGAGAGGCTATTCAAGCTCATGGTTCTAAAAGGAAAGACTGCTTAGAAATACCTGAAGAACCACTAAAGCTTAAAAGCATTTCTGAATTGAGTCCACAAGAGAATATTAGTCAATAGATTGAAGGGCATGTTGGGGTGGAAATTTTGATTTTATTTATATCTTTAGTCACATCATGTACCTGACAGCACTCAAGAAAGAACAGCCATTCATTAGCCTCATCTTGAAATGAATTTCCACCACAACATGCAAAATGCCCATCCCAGTAGGTGTACAGCAGAATGTAAGGTGTAAAGCAGAATGTAAGATAAAAACGTTATTATTTTTTGCAAATTATGCGAACAAATTAGTATTTAATACTGTAACTTCCAGTTTGTGCATAGAGCTTTGAGTTGAACCAAGTCTAGAATTCAGTATATGCACATCATCCACTAGATTATAATAAATTATATGATAATTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97698	Protein smoothened OS=Rattus norvegicus OX=10116 GN=Smo PE=2 SV=1
P56726	Protein smoothened OS=Mus musculus OX=10090 GN=Smo PE=1 SV=2
Q99835	Protein smoothened OS=Homo sapiens OX=9606 GN=SMO PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01392 all species →	Fz	Fz domain	Domain	Interproscan
PF01534 all species →	Frizzled	Frizzled/Smoothened family membrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR000539 all species →	Domain	Frizzled/Smoothened, 7TM	Interproscan
IPR015526 all species →	Family	Frizzled/secreted frizzled-related protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11309 all species →	FRIZZLED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005113 all species →	Molecular Function	patched binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0007224 all species →	Biological Process	smoothened signaling pathway	Interproscan
GO:0007389 all species →	Biological Process	pattern specification process	Interproscan
GO:0007417 all species →	Biological Process	central nervous system development	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0030425 all species →	Cellular Component	dendrite	Interproscan
GO:0071679 all species →	Biological Process	commissural neuron axon guidance	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06226	SMO; smoothened	-	G protein-coupled receptors	ko04030	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.