Gene detail

Detailed information of g22331.t1 in Acropora digitifera

Genomic Location: chr10Alt:20791831...20799609
NR annotation: XP_015753523.1, PREDICTED: neuronal pentraxin-2-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0C6B8	Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Svep1 PE=1 SV=1
A0A1D5NSM8	Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Danio rerio OX=7955 GN=svep1 PE=1 SV=1
Q8R1M8	Mucosal pentraxin OS=Mus musculus OX=10090 GN=Mptx1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00024 all species →	PAN_1	PAN domain	Domain	Interproscan
PF00354 all species →	Pentaxin	Pentaxin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003609 all species →	Domain	PAN/Apple domain	Interproscan
IPR001759 all species →	Family	Pentraxin-related	Interproscan
IPR051360 all species →	Family	Neuronal Pentraxin and Related	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19277 all species →	PENTRAXIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for g22331.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g22331.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g22331.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

22TPM > 0

1Conditions

10.9Max TPM

2.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	22	2.24	10.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	10.88
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	9.38
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	8.20
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	7.53
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	5.68
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	5.59
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	5.24
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	4.15
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	3.85
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	3.77
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	3.52
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	2.83
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	2.44
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	2.13
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	2.00
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	1.82
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	1.80
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	1.73
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	1.63
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	1.39
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	0.91
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	0.79
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.