Gene detail

Detailed information of g22432.t3 in Acropora digitifera

Genomic Location: chr10Alt:22104743...22120036
NR annotation: XP_044181466.1, glutamate receptor 2-like isoform X3 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g22432.t3

ATGGTGGCTGATGAGGGTCGTTTCCCAGAAGCTGTTTACTTCTATGGAATATCCCAAGATTCAAAGTTCACCTTGAGTCTGCTGCAGCTTACCGAGAAAGAAGCCACAAACGCTAGAAGTGAAAACGGCAAGGCATCGATGCAACGTTTAGCGGAAAACATAGCAAACCTTGACCCAGAAGTTATTCTCCTTTACACCACTGAAGAAAACATTCAACTTCTGATGACACAAACGATCCCAGGCAAAAACAGCAATTATACAAGATGGATCATACAAGGGCAGGTCAGTGATAATTTCACTGGTCCCACAAACGATGTGGTATTAGCGCTGGGACAGGCAAATGTACCGATCAAGGCATCCGGCAAGTTGGACCACCTTCCCTTCAAGCGGCCTGAGCATATCGGGGACCAGTATCTGGTTGCACAAGCTTTCGATGCCTTTCAAGTCCTCCAAAAAGCCTTAGAAAGAGAACCTTGCTCTTCAATAGATGCCGCAAATGTAACAGCAAAGGACAGAGAGAATCTGTTGGACTGTATGAAAAAGGTAAATCTGGATGGCTTTACAGGGGAGATAAAATTTGACGAAAATGGGCGACGAAAAGGAATTCATCTGGAAATTATGAATCTCCAAGGCAATTCTCTCAAGAAGGTAGGAAAATGGAACGCTGCTCAACGTGCTGTTTTCTACGAAAGTGTCTTACCTAATATACGACAACCTGATCGAGGAAGTTTGGATGGCTCGTTTCATAAAATAGTTGTTGCAGAGCAAACGGGATTTAAGGAGGTTTTGAATCAGAGATCGTCAAAAGTGCAAAAGTTTCGGCACCCTGATTTAAGGATGGACAGGGAAAATGTCCTGTCGATTAGTGGACACAAGGAAAGGGACAATGCTAGAAGAAAACGAAAAGCAAACGAGGAAGCAATTGCAGGGTTTAGTGATGGTGTAGCAGTAAAGGAAGAGAATTATTCTAAAAATCTGGAGAAGAAAGCCAAGCGACATCGAGTAGGGGTCCTTGATGATAACAATACACGAACGGGAAGTAAAGGAAGAAGAAAATCCGGAAATAGAAAGGTGTCAGCCCATGGCAAGAAGCAAAAAACCGCTGGCCAGAGAGCGTCAAGCGATGCAATAGCAGAGAAGCCTCCCAGCCATCAACTGCGTAGAATCTACAGTGCCGATGAGGAGACCGCAGCCCATGCATTGCTCAATCTATCAGTACCTGATATCCCGTTTGTGATGATAAAACATGAGGAAGATGGATCAATCTCTTATGAAGGATTTTGCATCGATTTATTAAAACAACTGGCCAAAATGCTCCATTTCACGTACGAGATCTACCTATCCCCTGACGGGCAGTACGGAGGTATAACAGAAAACAATACTTGGGATGGCATGATGGGAGAGCTGGTAAATAAGCGCGCAGATATCGCCCTCGCAGGTCTGACTGTTACGGAAGTCCGAGCGAAAGCGTTCGATTTTTCTGTCCCTTTTATGCACTACACCGATGATATTCTCCTCAAAAGACGATCATCAAACGAAGATACAACCTTTAATGCTCAGTTTATGCATCCATTTCACGACGACGTTTGGGTTGCAACACTTGTGACTCTGATGGTGATTTCTGTGTCTACCTTTGCACTCAACTATTTTAGTCCATATGGATACAAAGATAAGAATGGCAAAGGGACGTCAGAAGACTTTAGTTTCATCAATAGTGTGTGGTTTACATGGAGTTGTATGCTTCAGCAAGGTGCTGAAACCCAGCCCCGAAGCTTATCAGGTCGTATTCTTGCCGGCTGTTATTGGTTCTGTATCCTTATATGGGTGTCAACATACACAGCTAACTTGGCAGCCTTTTTCACCGTAAAAAACACCCAACAAGGAATAAATAATCTTGAGGATGTCCTTCGCTCATCCTACAAAGTAGGAATACGGGATAACACCGCCATCGAATACTTCTTCAAGGCAAGCGAGTATGATCAGCATCGCAAGATCTGGCATCGAATTGAATCAGGCAACAACAAATTCAAAAGCACACCTCAAGCCATACAGTGGGTCCGAGAGACGGAAGAATCATTGTTCATATATGATGGTCCAATTTTGAGGCACGTGGCAAATCAGCCTCCATGTGATCTCGTATCAGTTCCAGGTCTCAGCACAGCCAAAGGCTATGCACTCGCTTTTCAAGCAGGTTCTCCAAATGTGAGTGAGTTTTCCTTGGCTCTCTTACGACTGAATGAACAAGGTTTTCTTGGAAAATTGAAGAGAAAATGGTGGGATGATACTAACAACTGCCCGTTGGAACAAACAACAAAATTGACTCGGATCAATTTAAACAGTATGCTGGAAGTCTATATCGTGTTGGGCGCTGGAATGCTTGTGGCCTTCTTCACAATGATTGGGGAAATTCTTTGGAGCTGGAGACACAAGCGAAAGATAGAAACGAAATCAGAAACCAACAGGAAACTGAAGCTTCAATACTTGCGAAAAATCAAGCATCTTTTGTTCACGGCCGAGTTAGAAGGGGAGTGGGTCTATGACTGA

Transcript

chr10Alt.g22432.t3

ACGCGCACGCTTCACTTGATATCATCAACACTTTTCACTGGGAAAAAATAGCAATGGTGGCTGATGAGGGTCGTTTCCCAGAAGCTGTTTACTTCTATGGAATATCCCAAGATTCAAAGTTCACCTTGAGTCTGCTGCAGCTTACCGAGAAAGAAGCCACAAACGCTAGAAGTGAAAACGGCAAGGCATCGATGCAACGTTTAGCGGAAAACATAGCAAACCTTGACCCAGAAGTTATTCTCCTTTACACCACTGAAGAAAACATTCAACTTCTGATGACACAAACGATCCCAGGCAAAAACAGCAATTATACAAGATGGATCATACAAGGGCAGGTCAGTGATAATTTCACTGGTCCCACAAACGATGTGGTATTAGCGCTGGGACAGGCAAATGTACCGATCAAGGCATCCGGCAAGTTGGACCACCTTCCCTTCAAGCGGCCTGAGCATATCGGGGACCAGTATCTGGTTGCACAAGCTTTCGATGCCTTTCAAGTCCTCCAAAAAGCCTTAGAAAGAGAACCTTGCTCTTCAATAGATGCCGCAAATGTAACAGCAAAGGACAGAGAGAATCTGTTGGACTGTATGAAAAAGGTAAATCTGGATGGCTTTACAGGGGAGATAAAATTTGACGAAAATGGGCGACGAAAAGGAATTCATCTGGAAATTATGAATCTCCAAGGCAATTCTCTCAAGAAGGTAGGAAAATGGAACGCTGCTCAACGTGCTGTTTTCTACGAAAGTGTCTTACCTAATATACGACAACCTGATCGAGGAAGTTTGGATGGCTCGTTTCATAAAATAGTTGTTGCAGAGCAAACGGGATTTAAGGAGGTTTTGAATCAGAGATCGTCAAAAGTGCAAAAGTTTCGGCACCCTGATTTAAGGATGGACAGGGAAAATGTCCTGTCGATTAGTGGACACAAGGAAAGGGACAATGCTAGAAGAAAACGAAAAGCAAACGAGGAAGCAATTGCAGGGTTTAGTGATGGTGTAGCAGTAAAGGAAGAGAATTATTCTAAAAATCTGGAGAAGAAAGCCAAGCGACATCGAGTAGGGGTCCTTGATGATAACAATACACGAACGGGAAGTAAAGGAAGAAGAAAATCCGGAAATAGAAAGGTGTCAGCCCATGGCAAGAAGCAAAAAACCGCTGGCCAGAGAGCGTCAAGCGATGCAATAGCAGAGAAGCCTCCCAGCCATCAACTGCGTAGAATCTACAGTGCCGATGAGGAGACCGCAGCCCATGCATTGCTCAATCTATCAGTACCTGATATCCCGTTTGTGATGATAAAACATGAGGAAGATGGATCAATCTCTTATGAAGGATTTTGCATCGATTTATTAAAACAACTGGCCAAAATGCTCCATTTCACGTACGAGATCTACCTATCCCCTGACGGGCAGTACGGAGGTATAACAGAAAACAATACTTGGGATGGCATGATGGGAGAGCTGGTAAATAAGCGCGCAGATATCGCCCTCGCAGGTCTGACTGTTACGGAAGTCCGAGCGAAAGCGTTCGATTTTTCTGTCCCTTTTATGCACTACACCGATGATATTCTCCTCAAAAGACGATCATCAAACGAAGATACAACCTTTAATGCTCAGTTTATGCATCCATTTCACGACGACGTTTGGGTTGCAACACTTGTGACTCTGATGGTGATTTCTGTGTCTACCTTTGCACTCAACTATTTTAGTCCATATGGATACAAAGATAAGAATGGCAAAGGGACGTCAGAAGACTTTAGTTTCATCAATAGTGTGTGGTTTACATGGAGTTGTATGCTTCAGCAAGGTGCTGAAACCCAGCCCCGAAGCTTATCAGGTCGTATTCTTGCCGGCTGTTATTGGTTCTGTATCCTTATATGGGTGTCAACATACACAGCTAACTTGGCAGCCTTTTTCACCGTAAAAAACACCCAACAAGGAATAAATAATCTTGAGGATGTCCTTCGCTCATCCTACAAAGTAGGAATACGGGATAACACCGCCATCGAATACTTCTTCAAGGCAAGCGAGTATGATCAGCATCGCAAGATCTGGCATCGAATTGAATCAGGCAACAACAAATTCAAAAGCACACCTCAAGCCATACAGTGGGTCCGAGAGACGGAAGAATCATTGTTCATATATGATGGTCCAATTTTGAGGCACGTGGCAAATCAGCCTCCATGTGATCTCGTATCAGTTCCAGGTCTCAGCACAGCCAAAGGCTATGCACTCGCTTTTCAAGCAGGTTCTCCAAATGTGAGTGAGTTTTCCTTGGCTCTCTTACGACTGAATGAACAAGGTTTTCTTGGAAAATTGAAGAGAAAATGGTGGGATGATACTAACAACTGCCCGTTGGAACAAACAACAAAATTGACTCGGATCAATTTAAACAGTATGCTGGAAGTCTATATCGTGTTGGGCGCTGGAATGCTTGTGGCCTTCTTCACAATGATTGGGGAAATTCTTTGGAGCTGGAGACACAAGCGAAAGATAGAAACGAAATCAGAAACCAACAGGAAACTGAAGCTTCAATACTTGCGAAAAATCAAGCATCTTTTGTTCACGGCCGAGTTAGAAGGGGAGTGGGTCTATGACTGATTTGACGTCACAAACTAATTTACGTCGCATTAACTATTTGTAACCATGCGTGCAAAGTAGATTATGAAGTAGGGTGAAGAAGAACCGAACGAAAATCGTGTTTTCCGATGTCTCTCACCTCATCGTCGTTCTCTCGCCACAGAAATAAATATGGCGGAATATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P22756	Glutamate receptor ionotropic, kainate 1 OS=Rattus norvegicus OX=10116 GN=Grik1 PE=1 SV=3
P39086	Glutamate receptor ionotropic, kainate 1 OS=Homo sapiens OX=9606 GN=GRIK1 PE=1 SV=1
Q38PU4	Glutamate receptor ionotropic, kainate 1 OS=Macaca fascicularis OX=9541 GN=GRIK1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00060 all species →	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF01094 all species →	ANF_receptor	Receptor family ligand binding region	Family	Interproscan
PF10613 all species →	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001320 all species →	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR001508 all species →	Family	Ionotropic glutamate receptor, metazoa	Interproscan
IPR015683 all species →	Family	Ionotropic glutamate receptor	Interproscan
IPR001828 all species →	Domain	Receptor, ligand binding region	Interproscan
IPR019594 all species →	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966 all species →	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015276 all species →	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g22432.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.