Gene detail

Detailed information of g22434.t3 in Acropora digitifera

Genomic Location: chr10Alt:22184703...22204920
NR annotation: XP_044181190.1, LOW QUALITY PROTEIN: glutamate receptor 2-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g22434.t3

ATGGAGGGAGGAATAACTTATTTGTTGTTCTTGTTTACTGTCGGTCGAATTGTTGTACAGACGGGTTGCACTTCACAGAAAGTGTTCACCTGTGGCGTTACCACTACAGATTCCGAGTTTGATGCAATTACGTTCGCCCTCAACTACACGGCCCCCTTTAGCAATATTACAATAAATTTAAGAGCTTTCAATGCAACGGAGCCAGCTAACGGCGTTTGCAAACAAGCTTCAGAACTTCTTCAACATAATACCATTGCACTTCTTGATGGGAGCCACACCAAGATTCCTGCGTGCGCGCTTGCTACAATCACCAACATTCCTCTTATCCATCTCCATGGTAACAATTTAGCTCCGGATCGATGTGCTAAAGCTATTCAGTTGTCAGCAGATTACAAGGACTACGCGCATGCTTCACTTGATATCATCAACACATTTCACTGGAAAAATATAGCTTTGGTGGCTGATGAGGGTCGTTTCCCAGAAGCTGCTTACTTCTACGCAATATCCCAGGATTCAAAGTTCACCATGAGTCTGCTGCAGCTTACCGAGAAAGAAGGCACAAACGCTAGAAATGAAAACAGGAAAGCATCGATGCAACGTTTAGCGGAAAACATAGCAAACCTTGACCCAGAAGTTATTCTCCTCTACACCACTGAAGAAAAAATCCAACTTCTAATGGCACAAACGATCCCCGGCAAAAGCAGAAATTATACAAGGTGGATCATACAAGGGCAGGTCAGAGATAATTTCACCAGTCTCACAAACGATGTGGTCTTAGCGCTGAGACATGCAATTGTGCCGAGGGAGGCATCTGGCAAATTGGACCAATCCCTCCTGAATTGGCTTGAGCAAATCGGGGACAAGTATCTGGCTGCGCAAGGTTTCGATACCTTTCAACTCCTCCAAAAAGCGTTAGAAATAGAACCTTGCTCTTCAATAAATGCCTCAAAGGTGACAACAAAGGACAGAGAAAATCTGTTGGATTGCATGAAAAAGGTAAATCTTTACGGCATTACAGGGGAGGTAAAATTTGACGAAAATGGGCGACGAAACGGAATTCATCTGGAAATTCTGAATCTCCGAAACAATTCTTTTGAAAAGATAGGAAACTGGAGCGACACTCAACATGCTGTTTTCTTCAACACTGTTTTACATAATGTAAAACAAGCTGATCGAGGACGTTTGGATGGCTCGTTTCATAAAGTCGTTATTGCACTGGATCCCCCGTTTGTGATGACAAAACAAGAGGAAGATGGAACAGTCTCTTATGAAGGATTTTGCATCGATCTATTTAAAGAACTGGCCAAAGAGCTCAACTTCACTTACGAGATCTACCTATCCCCGGACGGGCAGTACGGCGGTAAAACAGAAAACGATACTTGGAATGGCGTAATGGGAGAGCTGGTAAATAGGCGCGCAGACATCGCCCTCGCAGGTCTGACTATTACGGAACTCCGAGAGAAAGTGGTCGATTTTTCTGTACCTTTTATGCACTACACCGATGACATTCTCCTCAAAAAACGATCAGCATCCGAAGAAAAATTTTTTAATACTCAGTTTATGCAGCCATTTCAGGACGACGTTTGGCTCGCAACACTTGTGACACTGGTGTTGATTTCTGTGTCTACCTTTGCACTCAACTATTTTAGTCCATATGGATATAAAGATAAGAATGGCCAAGGAACATCGGAAGACTTTAGTTTCATCAATAGCGTGTGGTTTACATGGAGTTGTATGCTTCAGCAAGGTGCTGAAACCCAGCCCCGAAGCTTATCAGGTCGTATTCTTGCCGGCTGTTATTGGTTCTGTATCCTCATATGGGTGTCAACCTACACTGCCAACTTAGCGGCCTTTTTCACGGTGAAAAACACGCAACAAGGAATAAATAATCTTGAGGATGTCCTTCGCTCATCGTACAAAGTAGGAATACGGGATAAAAGCAGCATCAGGGACTTCTTCAAGGCAAGCGAATATGATCAGCATCGCAAGATCTGGCATCGAATTGAAACAGGCAACAACAAATTCAAAAGCACACCTCAAGCTGTAGATTGGGTCCGCGAGACGGAAGAGTCATTGTTTATATTTGATGGTCCAATTTTGAGACACGTGGCAAATCAGCCTCCATGTGATCTCGTATCAGTTCCAGGTCTCAGCACAGCCAAAGGCTATGGACTCGCTTTTCAAGCAGGTTCTCCAGATGTGAGTAAATTCTCCTTGGCTATCTTACGACTGAATGAACAAGGTTTTGTGGGAAAACTGACTAGAAAATGGTGGGAAAATACCAACAACTGCCCGGTGGAACAACCAACAAAATTGAATCGGATAAGTTTAAACAGTATGCTGGGAGTGTATATCGTGTTGGGCGTTGGATTACTTGTGGCCTTCTTCACAATGATTGGGGAAATTCTCTGGAATCGGAGACAGAAACGAAAGTTAGAAACGGTATCAGAAACCAACAGGGAACCGAGGAAAGCAGAAGGACTATTATTCTTTATGATGGAGAGATAA

Transcript

chr10Alt.g22434.t3

GTTGATTATGTGATGCTCTGTCACGGCTGTTTGAACAGTAAAGGACAGTTCCCTTGGCGTGTTAGTTATTACAAGTAACTAATTACTCGCTGTTGGTATCTTTATCAACGTTGCATTCACGTAAGGCCGAGTGTCAGATCCATGCTTGCGTGCATGGAGTTTTTCATTAAGTCTCCTATGGAACGAGGATGGAGGGAGGAATAACTTATTTGTTGTTCTTGTTTACTGTCGGTCGAATTGTTGTACAGACGGGTTGCACTTCACAGAAAGTGTTCACCTGTGGCGTTACCACTACAGATTCCGAGTTTGATGCAATTACGTTCGCCCTCAACTACACGGCCCCCTTTAGCAATATTACAATAAATTTAAGAGCTTTCAATGCAACGGAGCCAGCTAACGGCGTTTGCAAACAAGCTTCAGAACTTCTTCAACATAATACCATTGCACTTCTTGATGGGAGCCACACCAAGATTCCTGCGTGCGCGCTTGCTACAATCACCAACATTCCTCTTATCCATCTCCATGGTAACAATTTAGCTCCGGATCGATGTGCTAAAGCTATTCAGTTGTCAGCAGATTACAAGGACTACGCGCATGCTTCACTTGATATCATCAACACATTTCACTGGAAAAATATAGCTTTGGTGGCTGATGAGGGTCGTTTCCCAGAAGCTGCTTACTTCTACGCAATATCCCAGGATTCAAAGTTCACCATGAGTCTGCTGCAGCTTACCGAGAAAGAAGGCACAAACGCTAGAAATGAAAACAGGAAAGCATCGATGCAACGTTTAGCGGAAAACATAGCAAACCTTGACCCAGAAGTTATTCTCCTCTACACCACTGAAGAAAAAATCCAACTTCTAATGGCACAAACGATCCCCGGCAAAAGCAGAAATTATACAAGGTGGATCATACAAGGGCAGGTCAGAGATAATTTCACCAGTCTCACAAACGATGTGGTCTTAGCGCTGAGACATGCAATTGTGCCGAGGGAGGCATCTGGCAAATTGGACCAATCCCTCCTGAATTGGCTTGAGCAAATCGGGGACAAGTATCTGGCTGCGCAAGGTTTCGATACCTTTCAACTCCTCCAAAAAGCGTTAGAAATAGAACCTTGCTCTTCAATAAATGCCTCAAAGGTGACAACAAAGGACAGAGAAAATCTGTTGGATTGCATGAAAAAGGTAAATCTTTACGGCATTACAGGGGAGGTAAAATTTGACGAAAATGGGCGACGAAACGGAATTCATCTGGAAATTCTGAATCTCCGAAACAATTCTTTTGAAAAGATAGGAAACTGGAGCGACACTCAACATGCTGTTTTCTTCAACACTGTTTTACATAATGTAAAACAAGCTGATCGAGGACGTTTGGATGGCTCGTTTCATAAAGTCGTTATTGCACTGGATCCCCCGTTTGTGATGACAAAACAAGAGGAAGATGGAACAGTCTCTTATGAAGGATTTTGCATCGATCTATTTAAAGAACTGGCCAAAGAGCTCAACTTCACTTACGAGATCTACCTATCCCCGGACGGGCAGTACGGCGGTAAAACAGAAAACGATACTTGGAATGGCGTAATGGGAGAGCTGGTAAATAGGCGCGCAGACATCGCCCTCGCAGGTCTGACTATTACGGAACTCCGAGAGAAAGTGGTCGATTTTTCTGTACCTTTTATGCACTACACCGATGACATTCTCCTCAAAAAACGATCAGCATCCGAAGAAAAATTTTTTAATACTCAGTTTATGCAGCCATTTCAGGACGACGTTTGGCTCGCAACACTTGTGACACTGGTGTTGATTTCTGTGTCTACCTTTGCACTCAACTATTTTAGTCCATATGGATATAAAGATAAGAATGGCCAAGGAACATCGGAAGACTTTAGTTTCATCAATAGCGTGTGGTTTACATGGAGTTGTATGCTTCAGCAAGGTGCTGAAACCCAGCCCCGAAGCTTATCAGGTCGTATTCTTGCCGGCTGTTATTGGTTCTGTATCCTCATATGGGTGTCAACCTACACTGCCAACTTAGCGGCCTTTTTCACGGTGAAAAACACGCAACAAGGAATAAATAATCTTGAGGATGTCCTTCGCTCATCGTACAAAGTAGGAATACGGGATAAAAGCAGCATCAGGGACTTCTTCAAGGCAAGCGAATATGATCAGCATCGCAAGATCTGGCATCGAATTGAAACAGGCAACAACAAATTCAAAAGCACACCTCAAGCTGTAGATTGGGTCCGCGAGACGGAAGAGTCATTGTTTATATTTGATGGTCCAATTTTGAGACACGTGGCAAATCAGCCTCCATGTGATCTCGTATCAGTTCCAGGTCTCAGCACAGCCAAAGGCTATGGACTCGCTTTTCAAGCAGGTTCTCCAGATGTGAGTAAATTCTCCTTGGCTATCTTACGACTGAATGAACAAGGTTTTGTGGGAAAACTGACTAGAAAATGGTGGGAAAATACCAACAACTGCCCGGTGGAACAACCAACAAAATTGAATCGGATAAGTTTAAACAGTATGCTGGGAGTGTATATCGTGTTGGGCGTTGGATTACTTGTGGCCTTCTTCACAATGATTGGGGAAATTCTCTGGAATCGGAGACAGAAACGAAAGTTAGAAACGGTATCAGAAACCAACAGGGAACCGAGGAAAGCAGAAGGACTATTATTCTTTATGATGGAGAGATAAAAACTGAGTTTACGTGAGTGCTGAAACGTCGGTTTCTGACAAGAGACATTTATTTTTCACAACCTACGAGTTGCTTGATCTTGTTGTCAGTTTCCGTGAATTGTATTTGAAATGAGATAAATTGGAATATTCAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P42262	Glutamate receptor 2 OS=Homo sapiens OX=9606 GN=GRIA2 PE=1 SV=3
P23819	Glutamate receptor 2 OS=Mus musculus OX=10090 GN=Gria2 PE=1 SV=3
P19491	Glutamate receptor 2 OS=Rattus norvegicus OX=10116 GN=Gria2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01094 all species →	ANF_receptor	Receptor family ligand binding region	Family	Interproscan
PF00060 all species →	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF10613 all species →	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001828 all species →	Domain	Receptor, ligand binding region	Interproscan
IPR015683 all species →	Family	Ionotropic glutamate receptor	Interproscan
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR001508 all species →	Family	Ionotropic glutamate receptor, metazoa	Interproscan
IPR019594 all species →	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR001320 all species →	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966 all species →	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015276 all species →	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g22434.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.