Gene detail

Detailed information of g2264.t1 in Tripedalia maipoensis

Genomic Location: scaffold_11:14354021...14374691
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2264.t1

ATGGAGTCCATTATGTGGCTCCGAGGACATTATATGCTTACCTGCATCTTAGCTCTTGTTATCATTTTCTTTACCCGTTTATGTCGATGTACGATTGAAAATATAGATCTTAATTACACTCATCCGTTGGCCTCTTTCGATGAGCTTTACGCAGATGGAATCGATGCATATTCCGATGGCAAGTGGAATGCAGCCATCCGGTCCTTTGAACTGGCGATCTCAGACTATCGGCATGAACAAGAGGTGAAGATTTATTGCCGTATGAAATGTAAATCAGAAATGAAGAACGATGGCATTTACAAATCGACTGAGTTTGATGAGACTTTATTGCTGCTTTATCACTCAGTGCGTATGCGTCGATGTGCCGATCACTGCGAGGAGAAATTCATGGGCAGGCGTCCTGCTGTTGCCAGATACGTAAGGAATGAGTTTGAGAAGAGGGAACCGTATAATTACCTTCAGTTTGCGTACTTTCAGGTTGGATCACTCAGGAAGGCAGCACAAGCTGCGCTTACCTATTTAGAGACCAATCAAGAACATGCAGTGATGCAGAAGAATTTTCAATTCTATGTTTCTGAACTGGGTGTGAAGAACAAAACAATAAAATCCATGGAAATGCTTCCTCATGTGGAGCTTTTCATGAAAGGAGATGATGCATATCAGGCCAGAGATTATCAGAGCTGCATTGATTTGTTCGAGGAATCTCTTAATGAATATTATAAAGCTTTACAAAAATGTCACATTTTGTGTGAATATCAACATGAGAAGCAGCAGTCCTCCTTTTCAGTTGCTCTATTTGACCACTTTACTGCCATTTTAGAGTGCAGAAAAGGCTGCGATGCTAAACTTCAAAATATTGGTCCAAAAATGAGACCAAAGTTACTTCAGGATCATTACCACTACTTGCAGTTCTCTTACTTTGAAGTTGGACGGCATAGGGATGCTGCTATCTGTGCCAAGACATATCAACTTTTTGATCCTAAAGATCCCATTATGGAGGAAAACATTGCCTATTATAATGAATTACTTGGGGGAGATCGAGTAAATATTTTCCCTCGAAAAAGAGCTCTGCTTCTGTTAAAAGAAAAGCAAGTAAGTGAAAAGCTGGTGTCAGTTGCCAAGCAGTTTGCAGATCCCACGCATGTCTTTGAGGAAGAAGAAACTGAAGCCAATATAGACGACATAGAGATAGCAAATGAAGTAGAAGGCACCTCTACTTTGTTGAGTAAGGGTGACAAGAGTGATGATGGTGTGCATCTAGACACAGAGCTTCCACCCATGAAGCGATCAGACAGATCCAGAAACCAAACCAGATGGAAATCGAACCCACAGTACGAGGGTGTCCGGCTACATCTTGCAGAGAAGGACTTGAATGGCACGGAGAGGGTGGCTGTCGACCATGTGATAACAGGCGAAGAATGTCAGAAGTTAATGAACTTTGTTGAGAGGCTTGCAGTCGACGGTGATGGGTATTCTACCACGCATGCGGAACCCAGTAAACCATTTACAGAAAAAGAGACTTTCAAGGGAGTGAATGTTGTTGCAGCGGCGCAAGCAGTTTTGCAGGGACGTGCGTCCATTGAAGAACTGGAGCTTTATATGAATTTGAGTCAGAGGGCTCTACGCTTTACCGAAGATTACTTTGACCTTCGTCGCCCTCTCTACTTTGCGTTCACGCATTTGGTGTGCCGCACAGCGCTACCGGAAGCTACAGATGAAGATCCGTTTGATCCCGATGCCGTGCACCTCAGTCATCCGGTGCATTCTGACAACTGCCTTCTGGGAGCCGATGGTTTTGGGACATGTCCGAAGCGTTTGCCGGCCTACACTTGGAGGGATTACAGTGCCATTTTGTACCTGAATGATGATTTTGAGGGAGGCGAGTTCGTCTTTGCAGATCACAAACTAAATATCCAATCGCTGCTTCCTGTGAAATGCGGCCGTCTAGTGGCCTTCTCAGCGGGATTCGAAAACTTACATGGCGTGCTCGGCGTACGAAAGGGAAAAAGATGTGCCTTGCCGCTCTGGTTTACTTTTTCCAAAGAAAAAGCAGAGAAACAACGATCCGAGGTGGAGCGGCTATTGGCCAAGCTGAAGCGAAACCGAGCAACGATGCAAAGAGCTGAGACGAGACTCAAGGAACATGAGAAAAAGCAAAAAAAGGATACAAGTGAAAATAAGCCAGTTAAGGCCTCTGCTGGGCGCATGGACAAGGGAGAGAGGTCGTCCAAGAAGAAGAATGATCTTGTCAACCACCAAACGAAAGATAAGTTGGGTGTCAACGTTGTAGGGGAACGTTCTGAATTGTGA

Transcript

g2264.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13640 all species →	2OG-FeII_Oxy_3	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR039575 all species →	Family	Prolyl 3-hydroxylase	Interproscan
IPR006620 all species →	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan
IPR044862 all species →	Domain	Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain	Interproscan
IPR005123 all species →	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14049 all species →	LEPRECAN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0032963 all species →	Biological Process	collagen metabolic process	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0031418 all species →	Molecular Function	L-ascorbic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08134	P3H1; procollagen-proline 3-dioxygenase 1	EC:1.14.11.7	Proteoglycans	ko00535	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.