Detailed information of g22656.t2 in Acropora digitifera

Genomic Location: chr10Alt:25812033...25847122
NR annotation: XP_044181974.1, LOW QUALITY PROTEIN: kinesin-like protein KIF13B [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9EQW7Kinesin-like protein KIF13A OS=Mus musculus OX=10090 GN=Kif13a PE=1 SV=1
Q9H1H9Kinesin-like protein KIF13A OS=Homo sapiens OX=9606 GN=KIF13A PE=1 SV=2
Q9NQT8Kinesin-like protein KIF13B OS=Homo sapiens OX=9606 GN=KIF13B PE=1 SV=2
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12473
all species →
DUF3694Kinesin protein FamilyInterproscan
PF00225
all species →
KinesinKinesin motor domainDomainInterproscan
PF00498
all species →
FHAFHA domainFamilyInterproscan
PF16183
all species →
Kinesin_assocKinesin-associatedFamilyInterproscan
PF01302
all species →
CAP_GLYCAP-Gly domainDomainInterproscan
PF12423
all species →
KIF1BKinesin protein 1BFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001752
all species →
DomainKinesin motor domainInterproscan
IPR000938
all species →
DomainCAP Gly-rich domainInterproscan
IPR036859
all species →
Homologous_superfamilyCAP Gly-rich domain superfamilyInterproscan
IPR022164
all species →
DomainKinesin-likeInterproscan
IPR000253
all species →
DomainForkhead-associated (FHA) domainInterproscan
IPR019821
all species →
Conserved_siteKinesin motor domain, conserved siteInterproscan
IPR032405
all species →
DomainKinesin-associatedInterproscan
IPR036961
all species →
Homologous_superfamilyKinesin motor domain superfamilyInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR008984
all species →
Homologous_superfamilySMAD/FHA domain superfamilyInterproscan
IPR022140
all species →
DomainKinesin-like KIF1-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47117
all species →
STAR-RELATED LIPID TRANSFER PROTEIN 9Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003777
all species →
Molecular Functionmicrotubule motor activityInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0007018
all species →
Biological Processmicrotubule-based movementInterproscan
GO:0008017
all species →
Molecular Functionmicrotubule bindingInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K17914KIF13; kinesin family member 13-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g22656.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples
0TPM > 0
1Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Coral branch 39 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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