Gene detail

Detailed information of g2267.t1 in Montipora capitata

Genomic Location: Sc0000033:467578...475786
NR annotation: XP_015764048.1, PREDICTED: meckelin-like [Acropora digitifera]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2267.t1

atgcatgctcattttgttgagctacgaaatctcttaaagtctgtaccttgggatttagtttatgaggaagaagacatggaactctcaaccgccaagtggatggatctctttctcgcagctgtagatgattgtgttcctaaaataaaagttaggtcggccaatagtgctccatggattgacgctgaagttctgaaagctgtgagaaagaaggagagactcagaaagaaagctaaaaaatcttcctctgtttatcactgggcaactttccgaaggcgtcgggcggcactcaagtccctcatcaaatggaaacgcaaacagtattttaaaggactgtcatctactttgacagagaatcccaagcgattttgggcttattatcaatccaaatataagaacaaaagacttccatcttctgtccgatataatggagccaatgtgtctgacgctcaggataaagccgagctatttaacaactattttaattcagtttttaagagtgatgactgtgcccctttgcatgaagactgctttcacggtgactttgatgttggtgcagatgttttgaataacgtcgaactttccccggctattgttttgaaattcttggaacagttaaacatctgtaaatcctgcggaccagataatattgctgttggttgtctgtctgctcttgctgcaattcttgctttagtaaaggtgacttcttggcgaagacgagagggcaaattagaatttgatggttttactattataaaatttattctgttttgctttgggaccttttccgtagtgctcttctggattgcatttggaatgtcattccagtggctggttttcttcaagcagcaaaaaacagtttcccttcttctcccatcagagagccaggagaagctatttttcacactcttttacgttaccttctcattcaagctccttgaggtggttcacatgttgctgacacagaccttttttgacatattttttattgattgggagcgtcctcagggaagagtcaatcagcctgctcagggtggaggaacaggggctactgatgctcctgtcagcatttggcgaactttattcattgctaatgaatggaatgaaatccagacaattcgaaaaacgaaccctgagttgcaggtttttcttgttttgttcttcttaaaggttgtaggatttgaatatttagctaccaccgacccctttgccagatacactgcaaattttgagactgattacattggcaacttcagccaagtcctgcgattcgccgttctttgcatcgtattcttgtccattgaggctgtgcagtggtttttctttgcattcatttatgagcgtttctttggggatgcacttggtgacttcatcgacttgtgtgcaatgagcaacgtgagcatctttattttagagaataatcgctatggctactacatccacgggcgttcagtgcatggacgtgctgatacaaacatgtggcagatgaatgaacaggtcaagcgtgaagaagatgatctgtgcggaaagcgaggcctggaacctaattcagaactgcagacatttgaagttgaggtaccattaaggttccgcgaacaatatgaggatgttgtaaggccattgctccaagaagggttgcagcaacagagacggaacataccaaattccatgggacaagatggccgtacaacaaatcttcccgctgcagtcgagaagcgtattcttgcgtacaacactcttaaccgtttcttatcagcgtttatcgatcattctctgagagatttggattatcttgtcagggataaacttttgtttgaacacatcttaaacatggaactcaaagagcttccgccccctgataaagcaatattctataatgataacggtcgttctttcaactccattttgttatacggcaacgaatggacattaatgctgtttgatcttctcgtgtttgcctttgttgattcgtttgctcaggattttgttctcgctggtattattacctacattgttacaaagttattaatcatgttgagaaacaagtttgggaggaaaaacctcaccagaaagacgctagttgatgagaggttcttaatttga

Transcript

g2267.t1

ATGCATGCTCATTTTGTTGAGCTACGAAATCTCTTAAAGTCTGTACCTTGGGATTTAGTTTATGAGGAAGAAGACATGGAACTCTCAACCGCCAAGTGGATGGATCTCTTTCTCGCAGCTGTAGATGATTGTGTTCCTAAAATAAAAGTTAGGTCGGCCAATAGTGCTCCATGGATTGACGCTGAAGTTCTGAAAGCTGTGAGAAAGAAGGAGAGACTCAGAAAGAAAGCTAAAAAATCTTCCTCTGTTTATCACTGGGCAACTTTCCGAAGGCGTCGGGCGGCACTCAAGTCCCTCATCAAATGGAAACGCAAACAGTATTTTAAAGGACTGTCATCTACTTTGACAGAGAATCCCAAGCGATTTTGGGCTTATTATCAATCCAAATATAAGAACAAAAGACTTCCATCTTCTGTCCGATATAATGGAGCCAATGTGTCTGACGCTCAGGATAAAGCCGAGctatttaacaactattttaattcagtttttaagAGTGATGACTGTGCCCCTTTGCATGAAGACTGCTTTCACGGTGACTTTGATGTTGGTGCAGATGTTTTGAATAACGTCGAACTTTCCCCGGCTATTGTTTTGAAATTCTTGGAACAGTTAAACATCTGTAAATCCTGCGGACCAGATAATATTGCTGTTGGTTGTCTGTCTGCTCTTGCTGCAATTCTTGCTTTAGTAAAGGTGACTTCTTGGCGAAGACGAGAGGGCAAATTAGAATTTGATGGTTTTACTATTATAAAATTTATTCTGTTTTGCTTTGGGACCTTTTCCGTAGTGCTCTTCTGGATTGCATTTGGAATGTCATTCCAGTGGCTGGTTTTCTTCAAGCAGCAAAAAACAGTTTCCCTTCTTCTCCCATCAGAGAGCCAGGAGAAGCTATTTTTCACACTCTTTTACGTTACCTTCTCATTCAAGCTCCTTGAGGTGGTTCACATGTTGCTGACACAGACCTTTTTTGACATATTTTTTATTGATTGGGAGCGTCCTCAGGGAAGAGTCAATCAGCCTGCTCAGGGTGGAGGAACAGGGGCTACTGATGCTCCTGTCAGCATTTGGCGAACTTTATTCATTGCTAATGAATGGAATGAAATCCAGACAATTCGAAAAACGAACCCTGAGTTGCaggtttttcttgttttgttcttCTTAAAGGTTGTAGGATTTGAATATTTAGCTACCACCGACCCCTTTGCCAGATACACTGCAAATTTTGAGACTGATTACATTGGCAACTTCAGCCAAGTCCTGCGATTCGCCGTTCTTTGCATCGTATTCTTGTCCATTGAGGCTGTGCAGTGGTTTTTCTTTGCATTCATTTATGAGCGTTTCTTTGGGGATGCACTTGGTGACTTCATCGACTTGTGTGCAATGAGCAACGTGAGCATCTTTATTTTAGAGAATAATCGCTATGGCTACTACATCCACGGGCGTTCAGTGCATGGACGTGCTGATACAAACATGTGGCAGATGAATGAACAGGTCAAGCGTGAAGAAGATGATCTGTGCGGAAAGCGAGGCCTGGAACCTAATTCAGAACTGCAGACATTTGAAGTTGAGGTACCATTAAGGTTCCGCGAACAATATGAGGATGTTGTAAGGCCATTGCTCCAAGAAGGGTTGCAGCAACAGAGACGGAACATACCAAATTCCATGGGACAAGATGGCCGTACAACAAATCTTCCCGCTGCAGTCGAGAAGCGTATTCTTGCGTACAACACTCTTAACCGTTTCTTATCAGCGTTTATCGATCATTCTCTGAGAGATTTGGATTATCTTGTCAGGGATAAACTTTTGTTTGAACACATCTTAAACATGGAACTCAAAGAGCTTCCGCCCCCTGATAAAGCAATATTCTATAATGATAACGGTCGTTCTTTCAACTCCATTTTGTTATACGGCAACGAATGGACATTAATGCTGTTTGATCTTCTCGTGTTTGCCTTTGTTGATTCGTTTGCTCAGGATTTTGTTCTCGCTGGTATTATTACCTACATTGTTACAAAGTTATTAATCATGTTGAGAAACAAGTTTGGGAGGAAAAACctcaccagaaagacgctagtTGATGAGAGGTTCTTAATTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BR76	Meckelin OS=Mus musculus OX=10090 GN=Tmem67 PE=1 SV=2
P0C152	Meckelin OS=Rattus norvegicus OX=10116 GN=Tmem67 PE=1 SV=1
Q5HYA8	Meckelin OS=Homo sapiens OX=9606 GN=TMEM67 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005384 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09773 all species →	Meckelin	Meckelin (Transmembrane protein 67)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019170 all species →	Family	Meckelin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21274 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0036038 all species →	Cellular Component	MKS complex	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0035869 all species →	Cellular Component	ciliary transition zone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19348	TMEM67, MKS3; meckelin	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2267.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

47TPM > 0

3Conditions

71.9Max TPM

26.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	25.39	71.93
whole organisms · low pH treatment	15	14	26.05	55.93
whole organisms · extra low pH treatment pH treatment	12	12	28.10	59.53

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	71.93
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	60.32
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	48.98
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	44.97
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	39.78
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	34.64
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	31.25
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	27.08
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	25.69
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	25.24
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	24.74
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	22.07
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	17.13
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	16.72
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	16.49
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	12.41
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	5.23
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	3.44
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	2.05
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	1.68
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	1.36
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	55.93
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	53.24
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	43.04
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	41.05
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	33.71
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	28.14
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	27.61
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	24.93
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	20.54
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	20.02
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	17.77
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	17.10
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	5.88
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	1.82
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	0.00
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	59.53
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	56.39
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	50.65
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	45.59
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	35.10
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	23.41
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	21.64
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	19.66
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	16.43
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	4.02
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	3.63
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	1.12

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.