Detailed information of g22752.t2 in Acropora digitifera

Genomic Location: chr10Alt:27106164...27133176
NR annotation: XP_044170015.1, uncharacterized protein LOC122954057 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00931
all species →
NB-ARCNB-ARC domainDomainInterproscan
PF00791
all species →
ZU5ZU5 domainFamilyInterproscan
PF13424
all species →
TPR_12Tetratricopeptide repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011990
all species →
Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR002182
all species →
DomainNB-ARCInterproscan
IPR019734
all species →
RepeatTetratricopeptide repeatInterproscan
IPR003593
all species →
DomainAAA+ ATPase domainInterproscan
IPR000906
all species →
DomainZU5 domainInterproscan
IPR006597
all species →
RepeatSel1-like repeatInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR051787
all species →
FamilyEffector and Ciliary Development-Associated ProteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45641
all species →
TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0043531
all species →
Molecular FunctionADP bindingInterproscan
GO:0016887
all species →
Molecular FunctionATP hydrolysis activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for g22752.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g22752.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples
0TPM > 0
1Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Coral branch 39 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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