Detailed information of g229.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_022727193.1, NADP-dependent succinate-semialdehyde dehydrogenase [Fodinicurvata sediminis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P25526Succinate-semialdehyde dehydrogenase [NADP(+)] GabD OS=Escherichia coli (strain K12) OX=83333 GN=gabD PE=1 SV=1
Q9I6M5Glutarate-semialdehyde dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=davD PE=1 SV=1
Q9SAK4Succinate-semialdehyde dehydrogenase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ALDH5F1 PE=1 SV=2
Gene familySubfamily
Transcription Factors FamilyMYB
Transcription Factors FamilyTHAP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07528DZF_NDZF N-terminal domainDomainInterproscan
PF20965DZF_CDZF C-terminal domainDomainInterproscan
PF00249Myb_DNA-bindingMyb-like DNA-binding domainDomainInterproscan
PF05699Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan
PF01847VHLVHL beta domainDomainInterproscan
PF00153Mito_carrMitochondrial carrier proteinRepeatInterproscan
PF02214BTB_2BTB/POZ domainDomainInterproscan
PF00520Ion_transIon transport proteinFamilyInterproscan
PF00171AldedhAldehyde dehydrogenase familyFamilyInterproscan
PF20700MutatorMutator-like transposaseDomainInterproscan
PF05485THAPTHAP domainDomainInterproscan
PF12171zf-C2H2_jazZinc-finger double-stranded RNA-bindingFamilyInterproscan
PF10453NUFIP1FMR1-interacting protein 1 (NUFIP1)FamilyInterproscan
PF19274PI4K_NPI4-kinase N-terminal regionFamilyInterproscan
PF00454PI3_PI4_kinasePhosphatidylinositol 3- and 4-kinaseFamilyInterproscan
PF00613PI3KaPhosphoinositide 3-kinase family, accessory domain (PIK domain)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006561DomainDZF domainInterproscan
IPR052134FamilyInterleukin enhancer-binding factor 2Interproscan
IPR043519Homologous_superfamilyNucleotidyltransferase superfamilyInterproscan
IPR049401DomainDZF domain, N-terminalInterproscan
IPR049402DomainDZF domain, C-terminalInterproscan
IPR017930DomainMyb domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR001005DomainSANT/Myb domainInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR017884DomainSANT domainInterproscan
IPR008906DomainHAT, C-terminal dimerisation domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR022772Domainvon Hippel-Lindau disease tumour suppressor, beta/alpha domainInterproscan
IPR037140Homologous_superfamilyvon Hippel-Lindau disease tumour suppressor, beta domain superfamilyInterproscan
IPR024053Domainvon Hippel-Lindau disease tumour suppressor, beta domainInterproscan
IPR036208Homologous_superfamilyVHL superfamilyInterproscan
IPR023395Homologous_superfamilyMitochondrial carrier domain superfamilyInterproscan
IPR018108RepeatMitochondrial substrate/solute carrierInterproscan
IPR050391FamilyMitochondrial Metabolite TransporterInterproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR006585DomainFucolectin tachylectin-4 pentraxin-1Interproscan
IPR003131DomainPotassium channel tetramerisation-type BTB domainInterproscan
IPR011333Homologous_superfamilySKP1/BTB/POZ domain superfamilyInterproscan
IPR005821DomainIon transport domainInterproscan
IPR027359Homologous_superfamilyVoltage-dependent channel domain superfamilyInterproscan
IPR016161Homologous_superfamilyAldehyde/histidinol dehydrogenaseInterproscan
IPR050740FamilyAldehyde Dehydrogenase SuperfamilyInterproscan
IPR016160Conserved_siteAldehyde dehydrogenase, cysteine active siteInterproscan
IPR015590DomainAldehyde dehydrogenase domainInterproscan
IPR016163Homologous_superfamilyAldehyde dehydrogenase, C-terminalInterproscan
IPR016162Homologous_superfamilyAldehyde dehydrogenase, N-terminalInterproscan
IPR029510Conserved_siteAldehyde dehydrogenase, glutamic acid active siteInterproscan
IPR049012DomainMutator-like transposase domainInterproscan
IPR006612DomainTHAP-type zinc fingerInterproscan
IPR022755DomainZinc finger, double-stranded RNA bindingInterproscan
IPR019496DomainFMR1-interacting protein 1, conserved domainInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR042236Homologous_superfamilyPhosphoinositide 3-kinase, accessory (PIK) domain superfamilyInterproscan
IPR000403DomainPhosphatidylinositol 3-/4-kinase, catalytic domainInterproscan
IPR001263DomainPhosphoinositide 3-kinase, accessory (PIK) domainInterproscan
IPR045495DomainPI4-kinase, N-terminalInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR018936Conserved_sitePhosphatidylinositol 3/4-kinase, conserved siteInterproscan
IPR015433FamilyPhosphatidylinositol kinaseInterproscan
IPR036940Homologous_superfamilyPhosphatidylinositol 3-/4-kinase, catalytic domain superfamilyInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46447INTERLEUKIN ENHANCER-BINDING FACTORInterproscan
PTHR12374TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATEDInterproscan
PTHR46880RAS-ASSOCIATING DOMAIN-CONTAINING PROTEINInterproscan
PTHR45618MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATEDInterproscan
PTHR11537VOLTAGE-GATED POTASSIUM CHANNELInterproscan
PTHR43353SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIALInterproscan
PTHR13309NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1Interproscan
PTHR46791EXPRESSED PROTEINInterproscan
PTHR10048PHOSPHATIDYLINOSITOL KINASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003725Molecular Functiondouble-stranded RNA bindingInterproscan
GO:0045893Biological Processpositive regulation of DNA-templated transcriptionInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0003713Molecular Functiontranscription coactivator activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0070461Cellular ComponentSAGA-type complexInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0051260Biological Processprotein homooligomerizationInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0005249Molecular Functionvoltage-gated potassium channel activityInterproscan
GO:0005251Molecular Functiondelayed rectifier potassium channel activityInterproscan
GO:0008076Cellular Componentvoltage-gated potassium channel complexInterproscan
GO:0016021Cellular ComponentmembraneInterproscan
GO:0071805Biological Processpotassium ion transmembrane transportInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0004777Molecular Functionsuccinate-semialdehyde dehydrogenase (NAD+) activityInterproscan
GO:0006807Biological Processobsolete nitrogen compound metabolic processInterproscan
GO:0009450Biological Processgamma-aminobutyric acid catabolic processInterproscan
GO:0016620Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptorInterproscan
GO:0000492Biological Processbox C/D snoRNP assemblyInterproscan
GO:0016301Molecular Functionkinase activityInterproscan
GO:0004430Molecular Function1-phosphatidylinositol 4-kinase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0046854Biological Processphosphatidylinositol phosphate biosynthetic processInterproscan
GO:0048015Biological Processphosphatidylinositol-mediated signalingInterproscan
GO:0052742Molecular Functionphosphatidylinositol kinase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13089ILF2; interleukin enhancer-binding factor 2-Ribosome biogenesisko03009deepkoala
Chromosome and associated proteinsko03036deepkoala
Spliceosomeko03041deepkoala

TOP