Gene detail

Detailed information of g22913.t1 in Acropora digitifera

Genomic Location: chr10Alt:28885101...28889945
NR annotation: XP_015771861.1, PREDICTED: uncharacterized protein LOC107350152 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr10Alt.g22913.t1

GCTTTAATAATATTTCGTGTCAAGGGGGAGCGAAGCAGAGAAATTGGATAAAGTTTTCAAACATTTGACAATGGCCAGATATTCAAATATTTGAAGCTTCCCTACAACTTACGATGGAGAGTTTGTGTGGAATTTGTGGCGCTAAAGGTTTGAAAAAGCAGCTGGTTTTGTTCCAGTTGAATTTGGAAGAAGCAATCTTGATGTGTGAAAGCAAGGAGTGTATTTATCCTTTGGGAGTTGCTGACAATTCGAAGTTAATTGTTCGTCGACAAGCTTCCGAGATATCTGCAAACCGACGAAAACGCAAAAAGAAGCACAAAACCAAGGAACTTGTGGTCCCCGAGATCAAGAATGATGTAAAAGAACTGCAATCTTTGGAAAGTTACCTTCACTGGCAAAATGTTGATGCATTGTGCTGGTTGCATTGTCTATTGTCTCTAATTGTGCACAACGTTACACTAGTAACAACTTCTTTGTCCCTTGCACAAAATGGTGTCTCCTTGTTGAAAACGGTTGTTACATTATTTAATAATGCACAAGATGTATCTTCAGCTGACAGAGAGCAGGCTATGGAAAGTTTGAAGGAAGCAAGAGATAATGTTTGGAGATATTTACAACCTTCATTAAAGTGCCAACATGGAGTTCAGGACAGCCCAGTCACTGCATTGCCTCTTCTGTTGCGGGAAAATAGTGCATTGGCTGAGAAGGCACTGCAGATTTATCGATGGGAATTCAATTGTAATGCCTGTGGGTATCATCAAATTGACAAAAGAAGCAAACACTTGGTGACTTTTCCAAATGTGGCAAAAAACTTTGGTTTACATAATCCTGTATTTGAACGTCAATGTTTTAAATGTGGTGCCTCTAAGCAGAGAAGCAAACTCGTTTATGAGAGAATGCCAGAGTGCGTTCTTTTTCATTTTGAGCAAGGGTTGCAATCATTCGAGGACCTCAGTTTTAAAGGGCACAATGAGCATTACATCCTCACACAGATTATTCAGTACAAGCGAAGCCCAGATCATTTCATGTGTTGGACAAGGGAGCCAAAAGGTAACAGGTGGATGGAGATAGACGATTTAAACTTCCAACATTGTAGCTGGATGTCTTTGTTCCCCAACATCCCTCCCTCGGAAGTTCATATTGCAGTATGGGAGAAAGTGTCATCCGATTTGATATCTCAATTAACAACTGTAAAAGATGTTGTAAGAAGGGGAACTGAGCAAAATCTCAAAATCGTGAAAGAGAGCTGTTCTGATACAAAACGTTCATCAAGACCACTTTCAGATATTGACTGTAATGTAACAATTGCATCAGTTATTAATGGCAAAAAGACTCTTAATTCACCGACTTCATGTGGCCCTGATTCTTCACTTCCTATCATAGCTACAGGCAGTCAAGTGTCACACAGATCACAAGCAAAATTGAAAGCTGGAAAGTTTGAACCATACATTCCAAGGAAAAAGAGACTTCTTAGCCCAAGCTCTACCAATTCATCTGTTTGTAGTAGGCAAGATTTTGACATAAGCATATCCAGCCCATTGAGTCCTTCGCCATCACAGCCATATTTAACATGGCAAGATATCAAAGAGCAAACTAATAAGTTAAACGTTGATGATCTGCAAAGTGACAGTGGCTATTCAAGTCCACTATCTGTTAGCTCATGCAGTAGTCTTGCTTTAAGTCAGTCCATTGGCAGTGGCAATTCATTGTCTGATTGTTTGGAAGATGTACACAGTTCTAATGATGCCGAGAAGCAGGAGTTAGACAAGGTGACTGATGATGCTGTCAGGGACAATTTTGCTGGTAGCACAAAGGTTGCTCTTGGTGTTTCATTATCAGGCAAGGCAAAGTCAAGCATGCTGCAAGGGGAAAATCAACAGAAAATGTCCTCTCATAGTAGTTCTTGGAATGATTATTCAATTGAACTGGCTAGTGAACTTGATGAGTTATTACCAGATTGCTTAATGGAGAATTCAAAGGAGTTTTCACTGAGTGACAGCATTTCAGCAAACCTGAAACTGGCAGACATTGAGAAACTGTCTGACGAACAGGACCAATTTATTCGGGACTTATTAGCAGGCTGACCATAGAAACAGACGCTCTTTAGAAGCTACCATGAGCAAAGCTATATCAGCAAATACCAATATTAATGAGACAAAAATTATCAGTATGCTGAACCCTCGCCATTTTGATTTGTTTCCTCTCAGTTCCCTGCAAAAGAAATGATGAAGTGACATCATTTTTTTATCATTCAGTGCCCAGTCTTGCTGTCTGCTACATTTCCAGTACCAGAATTATTGCATTGCTACTTTGGCATCACTGAACAACAAACAGACTGCAAGTATCGTAATAGTCTTGATTGCAAGTATTTTGTTTGCATTCAAGTTTTGACCACATTGCTATCCCTGAATCTCACAACCTTTTTCTTGTGACCCTCTTTGCATTTTGTAAATTGATTTCATAATCTCATAGTATAAAGCAAGGATACCACCTGACACTTGTCTCTTGCTTTTGAGATAATTTCAGTGCTCAGTGGTGATATAAACATCTGCTCAAGCTATCTGGCATTCCTGGTCTTATTATCCAGCTAAACATGAAGTCAACTCAATTTGTAGCTTGACAACAATTCAAAAATTTGTTATCCAACAAGCTGGATTCTAAAATTAACATTGTGAAAAATTACAAAACTGATGTTTCGAGCGTTAGTGCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3ULM6	SUMO-specific isopeptidase USPL1 OS=Mus musculus OX=10090 GN=Uspl1 PE=2 SV=2
Q6DRC5	SUMO-specific isopeptidase USPL1 OS=Danio rerio OX=7955 GN=uspl1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15499 all species →	Peptidase_C98	Ubiquitin-specific peptidase-like, SUMO isopeptidase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033505 all species →	Family	USPL1 peptidase	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR028890 all species →	Domain	Ubiquitin-specific peptidase-like, SUMO isopeptidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15294 all species →	RETINOVIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015030 all species →	Cellular Component	Cajal body	Interproscan
GO:0016926 all species →	Biological Process	protein desumoylation	Interproscan
GO:0030576 all species →	Biological Process	Cajal body organization	Interproscan
GO:0032183 all species →	Molecular Function	SUMO binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23008	USPL1; SUMO-specific isopeptidase USPL1	EC:3.4.22.-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.