Gene detail

Detailed information of g2292.t1 in Acropora digitifera

Genomic Location: chr1Alt:36465106...36467849
NR annotation: XP_015753426.1, PREDICTED: coiled-coil domain-containing protein 153-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8KB59	Dynein regulatory complex protein 12 OS=Danio rerio OX=7955 GN=drc12 PE=2 SV=1

Pfam domain

No Pfam domain signature was detected for g2292.t1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR033585 all species →	Family	Coiled-coil domain-containing protein 153	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28656 all species →	COILED-COIL DOMAIN-CONTAINING PROTEIN 153	Interproscan

Gene Ontology

No Gene Ontology signature was detected for g2292.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g2292.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2292.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

208.7Max TPM

166.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	166.14	208.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	208.67
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	194.45
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	193.58
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	193.49
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	192.90
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	189.47
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	180.72
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	178.01
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	177.10
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	176.78
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	176.65
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	176.44
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	173.54
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	173.20
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	173.19
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	172.87
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	172.18
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	171.45
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	170.52
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	168.03
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	166.81
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	166.27
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	161.23
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	161.01
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	160.41
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	157.98
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	157.48
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	152.96
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	152.77
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	152.29
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	147.58
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	147.15
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	147.07
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	144.99
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	142.57
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	141.43
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	140.68
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	138.60
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	126.78

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.