Gene detail

Detailed information of g22935.t2 in Acropora digitifera

Genomic Location: chr10Alt:29062043...29088735
NR annotation: XP_044180877.1, LOW QUALITY PROTEIN: oxysterol-binding protein-related protein 1-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g22935.t2

ATGTCTAGTTTCAGCAAGAAGGAGGAAAAGGAAGAGAAACTGTTGCAGTCCTCGCGAAGAGGAGACCTCAATGCAGTCCTCAGTTTGTTAGAGGTCAGGTCACCGAAGAATGGCCCTAAAAACATTGATGTAAATTGCAAAGGGAGATCAAAAGCCAATCAAGGATGGACCCCTCTTCATTTAGCAGCCTACTTTGGTCACAAAGACGTAGTGAGAGCATTATTGGAGAATGGAGCAGATGTCAATGCCAGAAATGGAATGGGAGACACTCCTTTACATCGAGCTGCTTTCACTGGACGAGCTGAAGTTGTTACCCTCCTTATTGAGCATGAAGCTGATGTAACAATCATAAATGGTGAAGGGAGGAAACCAAGTCAAGTTACCAACAGCTCAGAAGTCAAACATCTTATAAAAGCCGCTGAAAGAAGTCTCGAGCTCAAGTTGGAAGAGCACCTCCTCACTGCAGCTCGGGAAGGTGACGTCTCTGAGTTGAAGAAGCTGGTAAGCCTAAATTATATCATTGTGGCTTTTATCATCATCATCAATCAAATTATCTTATTGTTCTTTGTTTTTCATAGATTGACAGTGTACATCCTCCAAACATTAACTGCCAGGATGTATTGGGGAACACACCTCTTCACTGTGCTGCCTACAGTTTCTCTAGCTACTACCTTTCTAACTTTCACCCAAAACCAAGATGTGATACAATTGTACTGGGGACACAAAGTCATCGCAGTGACGCTGTTACAGCATGGAGCCGACACCACAATCAGAAATAGTAATGGTCAGCTTGCTCTTGAACTAGCATCCAACAAGAAAATGAAACAGTTGCTAGATGTACAACCACTGCAGAGACTTCACAAAGTTGCATCAAGACATGAAGGTCTCCTTCTCAAGAGGTCACGATTCTTTGGTTGGAAGAAGTTCTGGGTTGTCTTAGAAAGAGGTGTTCTCAGCTATTTTAGCAAAAGAGCTGATGCTGCAACAAGTATGAAGAGGCAGGGTTACAAATATCTTGATCACTGCAAGTTTTCTGTACCAAGAGATGAGAAGTTCAAGATTAAAATCCAATATTCTGACAACACAGTGCAGATCTGGAGCATTGCACCTAACGAGAAAACACCTCAGGTTCAGCGGCAGCGGTGGTTGAATTCTCTCCATGAACACTGCGCTTACAGTACGTTCTACACAACTCAACCAACACTATTAATAGACGATCAAGAAAATGACCTTGTTCCACTGGGTAACGTACAAGATTCCCTCAAGAGTGCCAAAGCACATCAACAACTCCTGAACGGTCAAGTCGATGGTGTGAATACTACAATTGCTGAAGTAACGAATTCACCGAATACCGCTCAAACTAACAAAGGTCTTCTGAAGGTCAGTGAAAAACTCAACGAAGTCGTTTCCACGGCGCGTAACATGTGCGTTGCGTTGACGCATTGCTTGGATTTGATGTCACAACAAGAGGAGGTGCGTCATCTTAGATACGAGGAAGAGGTGGAGAAGCGGCGCGTTCTTGAAGATGCACTTCATGTACTTGCCACAGAACATCACGCTTTGGAATGTTCCGTTGGCGCACACGAGTTTATCCATGGAAGTCGTATGACATTAGCAAGCGACTGCAATGAGCAATTCTTCGATGCGCGATCTGACGTCGGATGTCCGCCGGACGACCTACTTTCCGACGACGATGAAGACGATGGAGACGAGTATGTACCGAGCGTGGTGACGACTGATCCATCAATCGATTCGCTGCAGCAAAATCACGTTGAGGCGATTGCCAATCCAATTATTAGCAAAAAGAGGGCAGACACTGGAGGACAGTTAAAAACATTCGATAACCTTAGAATGACGCGGAGTTGTTCTGATAATACCATCGTTACGAACTCGGACCGGACATTATTAGACAGTCATGGATTATCAAAAGTCAGATCTGCGTCAAGTGATATAGAGCAGAATGCGGCTTTGCAAAGGAAACAAGAGGCTCAGAAACTTGTTCAAAGCGAAGTTCATTACAGGACTACCCTTCCTGTATCAATGCTTTCAAGAAACGAATTTAGCGTTTGGGCTGTGTTAAAGCAGTGTATTGGAAAGGATCTTTCAAGAATCACAATGCCAGTTATCTTCAATGAGCCATTGACATTTCTTCAGCGTGTCGCAGAGTACATGGAATATTGTCACCTGCTTCACACGGCTGCTAGTTTGGATGAACCTCTCCAACGTTTACAATTTGTATCGGCATTTGCCATATCCGCTACAGCTTCCAATCTGGATAGAGTAGGGAAACCTTTCAATCCACTGCTTGGAGAGACATACGAGCTGATTAGGGAAGACATGGGATTCAAGCTTGTGGCAGAACAGGTGAGCCATCATCCACCAGTGAGCGCGCTGCAAGTAATTAGCGAGGACTTTGTGTTTCATGTCACTGTTCAACCTAAAATGAAGTTTTGGGGCAAAGGAATTGAGATTCAGCCCAAGGGAGTGGTCACGCTCAAGTTCCCAAAGCACAACGAAGTTTATACCTGGAACAACGTCAATACCTGTGTACATAATATTATTGTGGGGCAACTCTGGATTGAGCAATACGGTCAAATGGAAATAACAAACCATACGACGGGTGATTACAGTGTTCTGCACTTTAAACCAGGTGGCTGGTTTGGAAAAGACGTCAACAAAATCGAAGGTTCCATCTTCTCTGCGGACAAGCGAAAGCGTTTCATCATCAGAGGAGACTGGACGGATAGAATCCAGTGTTTCGCGGTGGACAAATTCAACAAGAAAGACTTCAAACGCGAATCGAAACGTCGGCGATCTGACGGCGCCAGCGAAGCGGATGCCAAAGATTCAACCTCCGCTGCGTCCCTGGAGAGTTTTAGTAGTGGAAGCAGTGATGGCAGCGCTACAGTGGACACTTCTGCTGCCAAAGATCTCTGGAGATTTCAAGAAAGACCACCAAATAGTAAACAGATGTACAATTTTACTACATACGCAATGCAACTTAACGAACTACGCGAAGAACAAAAGTCTCAGCTTCCGCCCACGGACTCAAGGCTAAGACCGGATTGTCGCGCCCTAGAAAACGGGGATTTAGATGCTGCTACTCGAGAGAAAATCAGACTAGAGGAAAAACAAAGATCTGCGAGAAAAGAAAGATCAAAAAACGAGCGTTGGATTCCGCGATGGTTTAAAGAAGACATCAACCCTTATACTGGACAACTAGACTGGCTCTTTACAAACACATATTGGAATAGAAACTGGGCAAGTTGTCCAGATATTTTTTAG

Transcript

chr10Alt.g22935.t2

GATAAAGATTCATTGCATTCGAAATAACAGGAATGTCTAGTTTCAGCAAGAAGGAGGAAAAGGAAGAGAAACTGTTGCAGTCCTCGCGAAGAGGAGACCTCAATGCAGTCCTCAGTTTGTTAGAGGTCAGGTCACCGAAGAATGGCCCTAAAAACATTGATGTAAATTGCAAAGGGAGATCAAAAGCCAATCAAGGATGGACCCCTCTTCATTTAGCAGCCTACTTTGGTCACAAAGACGTAGTGAGAGCATTATTGGAGAATGGAGCAGATGTCAATGCCAGAAATGGAATGGGAGACACTCCTTTACATCGAGCTGCTTTCACTGGACGAGCTGAAGTTGTTACCCTCCTTATTGAGCATGAAGCTGATGTAACAATCATAAATGGTGAAGGGAGGAAACCAAGTCAAGTTACCAACAGCTCAGAAGTCAAACATCTTATAAAAGCCGCTGAAAGAAGTCTCGAGCTCAAGTTGGAAGAGCACCTCCTCACTGCAGCTCGGGAAGGTGACGTCTCTGAGTTGAAGAAGCTGGTAAGCCTAAATTATATCATTGTGGCTTTTATCATCATCATCAATCAAATTATCTTATTGTTCTTTGTTTTTCATAGATTGACAGTGTACATCCTCCAAACATTAACTGCCAGGATGTATTGGGGAACACACCTCTTCACTGTGCTGCCTACAGTTTCTCTAGCTACTACCTTTCTAACTTTCACCCAAAACCAAGATGTGATACAATTGTACTGGGGACACAAAGTCATCGCAGTGACGCTGTTACAGCATGGAGCCGACACCACAATCAGAAATAGTAATGGTCAGCTTGCTCTTGAACTAGCATCCAACAAGAAAATGAAACAGTTGCTAGATGTACAACCACTGCAGAGACTTCACAAAGTTGCATCAAGACATGAAGGTCTCCTTCTCAAGAGGTCACGATTCTTTGGTTGGAAGAAGTTCTGGGTTGTCTTAGAAAGAGGTGTTCTCAGCTATTTTAGCAAAAGAGCTGATGCTGCAACAAGTATGAAGAGGCAGGGTTACAAATATCTTGATCACTGCAAGTTTTCTGTACCAAGAGATGAGAAGTTCAAGATTAAAATCCAATATTCTGACAACACAGTGCAGATCTGGAGCATTGCACCTAACGAGAAAACACCTCAGGTTCAGCGGCAGCGGTGGTTGAATTCTCTCCATGAACACTGCGCTTACAGTACGTTCTACACAACTCAACCAACACTATTAATAGACGATCAAGAAAATGACCTTGTTCCACTGGGTAACGTACAAGATTCCCTCAAGAGTGCCAAAGCACATCAACAACTCCTGAACGGTCAAGTCGATGGTGTGAATACTACAATTGCTGAAGTAACGAATTCACCGAATACCGCTCAAACTAACAAAGGTCTTCTGAAGGTCAGTGAAAAACTCAACGAAGTCGTTTCCACGGCGCGTAACATGTGCGTTGCGTTGACGCATTGCTTGGATTTGATGTCACAACAAGAGGAGGTGCGTCATCTTAGATACGAGGAAGAGGTGGAGAAGCGGCGCGTTCTTGAAGATGCACTTCATGTACTTGCCACAGAACATCACGCTTTGGAATGTTCCGTTGGCGCACACGAGTTTATCCATGGAAGTCGTATGACATTAGCAAGCGACTGCAATGAGCAATTCTTCGATGCGCGATCTGACGTCGGATGTCCGCCGGACGACCTACTTTCCGACGACGATGAAGACGATGGAGACGAGTATGTACCGAGCGTGGTGACGACTGATCCATCAATCGATTCGCTGCAGCAAAATCACGTTGAGGCGATTGCCAATCCAATTATTAGCAAAAAGAGGGCAGACACTGGAGGACAGTTAAAAACATTCGATAACCTTAGAATGACGCGGAGTTGTTCTGATAATACCATCGTTACGAACTCGGACCGGACATTATTAGACAGTCATGGATTATCAAAAGTCAGATCTGCGTCAAGTGATATAGAGCAGAATGCGGCTTTGCAAAGGAAACAAGAGGCTCAGAAACTTGTTCAAAGCGAAGTTCATTACAGGACTACCCTTCCTGTATCAATGCTTTCAAGAAACGAATTTAGCGTTTGGGCTGTGTTAAAGCAGTGTATTGGAAAGGATCTTTCAAGAATCACAATGCCAGTTATCTTCAATGAGCCATTGACATTTCTTCAGCGTGTCGCAGAGTACATGGAATATTGTCACCTGCTTCACACGGCTGCTAGTTTGGATGAACCTCTCCAACGTTTACAATTTGTATCGGCATTTGCCATATCCGCTACAGCTTCCAATCTGGATAGAGTAGGGAAACCTTTCAATCCACTGCTTGGAGAGACATACGAGCTGATTAGGGAAGACATGGGATTCAAGCTTGTGGCAGAACAGGTGAGCCATCATCCACCAGTGAGCGCGCTGCAAGTAATTAGCGAGGACTTTGTGTTTCATGTCACTGTTCAACCTAAAATGAAGTTTTGGGGCAAAGGAATTGAGATTCAGCCCAAGGGAGTGGTCACGCTCAAGTTCCCAAAGCACAACGAAGTTTATACCTGGAACAACGTCAATACCTGTGTACATAATATTATTGTGGGGCAACTCTGGATTGAGCAATACGGTCAAATGGAAATAACAAACCATACGACGGGTGATTACAGTGTTCTGCACTTTAAACCAGGTGGCTGGTTTGGAAAAGACGTCAACAAAATCGAAGGTTCCATCTTCTCTGCGGACAAGCGAAAGCGTTTCATCATCAGAGGAGACTGGACGGATAGAATCCAGTGTTTCGCGGTGGACAAATTCAACAAGAAAGACTTCAAACGCGAATCGAAACGTCGGCGATCTGACGGCGCCAGCGAAGCGGATGCCAAAGATTCAACCTCCGCTGCGTCCCTGGAGAGTTTTAGTAGTGGAAGCAGTGATGGCAGCGCTACAGTGGACACTTCTGCTGCCAAAGATCTCTGGAGATTTCAAGAAAGACCACCAAATAGTAAACAGATGTACAATTTTACTACATACGCAATGCAACTTAACGAACTACGCGAAGAACAAAAGTCTCAGCTTCCGCCCACGGACTCAAGGCTAAGACCGGATTGTCGCGCCCTAGAAAACGGGGATTTAGATGCTGCTACTCGAGAGAAAATCAGACTAGAGGAAAAACAAAGATCTGCGAGAAAAGAAAGATCAAAAAACGAGCGTTGGATTCCGCGATGGTTTAAAGAAGACATCAACCCTTATACTGGACAACTAGACTGGCTCTTTACAAACACATATTGGAATAGAAACTGGGCAAGTTGTCCAGATATTTTTTAGACAAATCAAAGGAAGAAGTGACCTCTGGCTCGTGAGCAGTTGTACCTCCCAACAGTAAAGCTCAGCATCTGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K4M9	Oxysterol-binding protein-related protein 1 OS=Rattus norvegicus OX=10116 GN=Osbpl1a PE=1 SV=1
Q91XL9	Oxysterol-binding protein-related protein 1 OS=Mus musculus OX=10090 GN=Osbpl1a PE=1 SV=2
Q8BX94	Oxysterol-binding protein-related protein 2 OS=Mus musculus OX=10090 GN=Osbpl2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01237 all species →	Oxysterol_BP	Oxysterol-binding protein	Family	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR000648 all species →	Family	Oxysterol-binding protein	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR037239 all species →	Homologous_superfamily	Oxysterol-binding protein superfamily	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR018494 all species →	Conserved_site	Oxysterol-binding protein, conserved site	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10972 all species →	OXYSTEROL-BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015248 all species →	Molecular Function	obsolete sterol transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0032934 all species →	Molecular Function	sterol binding	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0097038 all species →	Cellular Component	perinuclear endoplasmic reticulum	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20174	OSBPL1_2, ORP1_2; oxysterol-binding protein-related protein 1/2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g22935.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.