Gene detail

Detailed information of g22982.t1 in Acropora digitifera

Genomic Location: chr10Alt:29636063...29646357
NR annotation: XP_029206586.2, protein Wnt-8b-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P51029	Protein Wnt-8b OS=Danio rerio OX=7955 GN=wnt8b PE=2 SV=1
P51028	Protein Wnt-8a OS=Danio rerio OX=7955 GN=wnt8a PE=2 SV=2
Q93098	Protein Wnt-8b OS=Homo sapiens OX=9606 GN=WNT8B PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00110 all species →	wnt	wnt family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005817 all species →	Family	Wnt	Interproscan
IPR043158 all species →	Homologous_superfamily	Wnt, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12027 all species →	WNT RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005102 all species →	Molecular Function	signaling receptor binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0016055 all species →	Biological Process	Wnt signaling pathway	Interproscan
GO:0005109 all species →	Molecular Function	frizzled binding	Interproscan
GO:0005125 all species →	Molecular Function	cytokine activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0030182 all species →	Biological Process	neuron differentiation	Interproscan
GO:0045165 all species →	Biological Process	cell fate commitment	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00714	WNT8; wingless-type MMTV integration site family, member 8	-	Glycosaminoglycan binding proteins	ko00536	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g22982.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

271.6Max TPM

49.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	49.41	271.58

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	271.58
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	184.08
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	150.80
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	128.72
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	78.45
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	59.86
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	51.77
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	51.47
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	49.47
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	49.46
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	47.18
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	46.14
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	45.33
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	44.36
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	40.01
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	39.42
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	39.28
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	38.04
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	35.06
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	34.44
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	34.15
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	33.99
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	32.48
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	32.33
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	30.27
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	29.54
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	25.10
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	24.06
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	23.79
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	23.28
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	23.21
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	22.36
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	20.58
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	18.60
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	18.41
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	15.05
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	14.52
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	12.27
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	8.06

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.