Detailed information of g230.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MBU2513625.1, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG [bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
B5YJL3tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) OX=289376 GN=mnmG PE=3 SV=1
Q746Q4tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=mnmG PE=3 SV=1
A5G9V2tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Geotalea uraniireducens (strain Rf4) OX=351605 GN=mnmG PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilybHLH
Ubiquitin FamilyUBD|Alpha-Helix|UBA

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF19745FUT8_N_catAlpha-(1,6)-fucosyltransferase N- and catalytic domainsDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF02121IP_transPhosphatidylinositol transfer proteinFamilyInterproscan
PF00010HLHHelix-loop-helix DNA-binding domainDomainInterproscan
PF13932GIDA_CtRNA modifying enzyme MnmG/GidA C-terminal helical bundleDomainInterproscan
PF21680GIDA_C_1sttRNA modifying enzyme MnmG/GidA C-terminal helical domainDomainInterproscan
PF01134GIDAGlucose inhibited division protein AFamilyInterproscan
PF00535Glycos_transf_2Glycosyl transferase family 2FamilyInterproscan
PF00652Ricin_B_lectinRicin-type beta-trefoil lectin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR009060Homologous_superfamilyUBA-like superfamilyInterproscan
IPR015940DomainUbiquitin-associated domainInterproscan
IPR052293FamilySerine-Rich Repeat Protein (SRRP)Interproscan
IPR045573DomainAlpha-(1,6)-fucosyltransferase, N- and catalytic domainInterproscan
IPR027350DomainGlycosyltransferase family 23 (GT23) domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR001666FamilyPhosphatidylinositol transfer proteinInterproscan
IPR023393Homologous_superfamilySTART-like domain superfamilyInterproscan
IPR050283FamilyE-box Binding Transcriptional RegulatorsInterproscan
IPR011598DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR036638Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR036188Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan
IPR047001DomaintRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal subdomainInterproscan
IPR004416FamilytRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmGInterproscan
IPR020595Conserved_siteMnmG-related, conserved siteInterproscan
IPR044920Homologous_superfamilytRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal subdomain superfamilyInterproscan
IPR002218FamilytRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-relatedInterproscan
IPR026904DomaintRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, C-terminalInterproscan
IPR049312DomaintRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal, N-terninal subdomainInterproscan
IPR040131DomainMnmG, N-terminal domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR051188FamilyPHD-type Zinc Finger Domain-Containing ProteinInterproscan
IPR001173DomainGlycosyltransferase 2-likeInterproscan
IPR000772DomainRicin B, lectin domainInterproscan
IPR035992Homologous_superfamilyRicin B-like lectinsInterproscan
IPR045885DomainN-acetylgalactosaminyltransferaseInterproscan
IPR029044Homologous_superfamilyNucleotide-diphospho-sugar transferasesInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12239PROTEIN CBG20215-RELATEDInterproscan
PTHR13132ALPHA- 1,6 -FUCOSYLTRANSFERASEInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR10658PHOSPHATIDYLINOSITOL TRANSFER PROTEINInterproscan
PTHR23349BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWISTInterproscan
PTHR11806GLUCOSE INHIBITED DIVISION PROTEIN AInterproscan
PTHR12420PHD FINGER PROTEINInterproscan
PTHR11675N-ACETYLGALACTOSAMINYLTRANSFERASEInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006487Biological Processprotein N-linked glycosylationInterproscan
GO:0036071Biological ProcessN-glycan fucosylationInterproscan
GO:0046921Molecular Functionalpha-(1->6)-fucosyltransferase activityInterproscan
GO:0005548Molecular Functionphospholipid transporter activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008525Molecular Functionphosphatidylcholine transporter activityInterproscan
GO:0008526Molecular Functionphosphatidylinositol transfer activityInterproscan
GO:0015914Biological Processphospholipid transportInterproscan
GO:0031210Molecular Functionphosphatidylcholine bindingInterproscan
GO:0035091Molecular Functionphosphatidylinositol bindingInterproscan
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0032502Biological Processdevelopmental processInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0002098Biological ProcesstRNA wobble uridine modificationInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0008033Biological ProcesstRNA processingInterproscan
GO:0030488Biological ProcesstRNA methylationInterproscan
GO:0050660Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0004653Molecular Functionpolypeptide N-acetylgalactosaminyltransferase activityInterproscan
GO:0005794Cellular ComponentGolgi apparatusInterproscan
GO:0006493Biological Processprotein O-linked glycosylationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09067ASCL; achaete-scute complex protein-Chromosome and associated proteinsko03036deepkoala
Glycosyltransferasesko01003deepkoala
Transcription factorsko03000deepkoala

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