Gene detail

Detailed information of g231.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: PCI29513.1, acetyl-CoA carboxylase biotin carboxylase subunit [SAR324 cluster bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q06862	Biotin carboxylase OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=accC PE=3 SV=1
P49787	Biotin carboxylase 1 OS=Bacillus subtilis (strain 168) OX=224308 GN=accC1 PE=3 SV=3
P43873	Biotin carboxylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=accC PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000033 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000437 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000796 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001406 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001422 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001788 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004046 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004159 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004993 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004998 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008139 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0011689 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0016651 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02121 all species →	IP_trans	Phosphatidylinositol transfer protein	Family	Interproscan
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF02785 all species →	Biotin_carb_C	Biotin carboxylase C-terminal domain	Domain	Interproscan
PF00289 all species →	Biotin_carb_N	Biotin carboxylase, N-terminal domain	Domain	Interproscan
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF01607 all species →	CBM_14	Chitin binding Peritrophin-A domain	Domain	Interproscan
PF01834 all species →	XRCC1_N	XRCC1 N terminal domain	Domain	Interproscan
PF05380 all species →	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF19745 all species →	FUT8_N_cat	Alpha-(1,6)-fucosyltransferase N- and catalytic domains	Domain	Interproscan
PF05454 all species →	DAG1	Dystroglycan (Dystrophin-associated glycoprotein 1)	Family	Interproscan
PF15613 all species →	WSD	Williams-Beuren syndrome DDT (WSD), D-TOX E motif	Family	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan
PF15612 all species →	WHIM1	WSTF, HB1, Itc1p, MBD9 motif 1	Motif	Interproscan
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF04841 all species →	Vps16_N	Vps16, N-terminal region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001666 all species →	Family	Phosphatidylinositol transfer protein	Interproscan
IPR023393 all species →	Homologous_superfamily	START-like domain superfamily	Interproscan
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR052035 all species →	Family	Zinc finger BED domain-containing	Interproscan
IPR005482 all species →	Domain	Biotin carboxylase, C-terminal	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR011764 all species →	Domain	Biotin carboxylation domain	Interproscan
IPR005481 all species →	Domain	Biotin carboxylase-like, N-terminal domain	Interproscan
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR050856 all species →	Family	Biotin-dependent Carboxylase Complex	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR004549 all species →	Family	Acetyl-CoA carboxylase, biotin carboxylase	Interproscan
IPR011054 all species →	Homologous_superfamily	Rudiment single hybrid motif	Interproscan
IPR036508 all species →	Homologous_superfamily	Chitin binding domain superfamily	Interproscan
IPR002557 all species →	Domain	Chitin binding domain	Interproscan
IPR002706 all species →	Domain	DNA-repair protein Xrcc1, N-terminal	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR008042 all species →	Family	Retrotransposon, Pao	Interproscan
IPR027350 all species →	Domain	Glycosyltransferase family 23 (GT23) domain	Interproscan
IPR045573 all species →	Domain	Alpha-(1,6)-fucosyltransferase, N- and catalytic domain	Interproscan
IPR006644 all species →	Domain	Dystroglycan-type cadherin-like	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR030398 all species →	Domain	DG-type SEA domain	Interproscan
IPR008465 all species →	Domain	Dystroglycan, C-terminal	Interproscan
IPR028941 all species →	Domain	WHIM2 domain	Interproscan
IPR018501 all species →	Domain	DDT domain	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR047171 all species →	Family	Bromodomain adjacent to zinc finger domain protein 1A	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR018359 all species →	Conserved_site	Bromodomain, conserved site	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR028942 all species →	Domain	WHIM1 domain	Interproscan
IPR006926 all species →	Domain	Vps16, N-terminal	Interproscan
IPR016534 all species →	Family	Vacuolar protein sorting-associated protein 16	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10658 all species →	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN	Interproscan
PTHR46481 all species →	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan
PTHR18866 all species →	CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE	Interproscan
PTHR11370 all species →	DNA-REPAIR PROTEIN XRCC1	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan
PTHR13132 all species →	ALPHA- 1,6 -FUCOSYLTRANSFERASE	Interproscan
PTHR21559 all species →	DYSTROGLYCAN-RELATED	Interproscan
PTHR46510 all species →	BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A	Interproscan
PTHR12811 all species →	VACUOLAR PROTEIN SORTING VPS16	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005548 all species →	Molecular Function	phospholipid transporter activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008525 all species →	Molecular Function	phosphatidylcholine transporter activity	Interproscan
GO:0008526 all species →	Molecular Function	phosphatidylinositol transfer activity	Interproscan
GO:0015914 all species →	Biological Process	phospholipid transport	Interproscan
GO:0031210 all species →	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0016874 all species →	Molecular Function	ligase activity	Interproscan
GO:0008061 all species →	Molecular Function	chitin binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0000012 all species →	Biological Process	single strand break repair	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan
GO:0036071 all species →	Biological Process	N-glycan fucosylation	Interproscan
GO:0046921 all species →	Molecular Function	alpha-(1->6)-fucosyltransferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0002009 all species →	Biological Process	morphogenesis of an epithelium	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0016011 all species →	Cellular Component	dystroglycan complex	Interproscan
GO:0016203 all species →	Biological Process	muscle attachment	Interproscan
GO:0021675 all species →	Biological Process	nerve development	Interproscan
GO:0042383 all species →	Cellular Component	sarcolemma	Interproscan
GO:0043236 all species →	Molecular Function	laminin binding	Interproscan
GO:0016010 all species →	Cellular Component	dystrophin-associated glycoprotein complex	Interproscan
GO:0000228 all species →	Cellular Component	nuclear chromosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008623 all species →	Cellular Component	CHRAC	Interproscan
GO:0031445 all species →	Biological Process	regulation of heterochromatin formation	Interproscan
GO:0045740 all species →	Biological Process	positive regulation of DNA replication	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0007033 all species →	Biological Process	vacuole organization	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0030897 all species →	Cellular Component	HOPS complex	Interproscan
GO:0042144 all species →	Biological Process	vacuole fusion, non-autophagic	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01961	accC; acetyl-CoA carboxylase, biotin carboxylase subunit	EC:6.4.1.2 EC:6.3.4.14	Fatty acid biosynthesis	ko00061	deepkoala
K03515	REV1; DNA repair protein REV1	EC:2.7.7.-	DNA repair and recombination proteins	ko03400	deepkoala
K11655	BAZ1A, ACF1; bromodomain adjacent to zinc finger domain protein 1A	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.