Detailed information of g231.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: PCI29513.1, acetyl-CoA carboxylase biotin carboxylase subunit [SAR324 cluster bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q06862Biotin carboxylase OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=accC PE=3 SV=1
P49787Biotin carboxylase 1 OS=Bacillus subtilis (strain 168) OX=224308 GN=accC1 PE=3 SV=3
P43873Biotin carboxylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=accC PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|PHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02121IP_transPhosphatidylinositol transfer proteinFamilyInterproscan
PF05699Dimer_Tnp_hAThAT family C-terminal dimerisation regionDomainInterproscan
PF02785Biotin_carb_CBiotin carboxylase C-terminal domainDomainInterproscan
PF00289Biotin_carb_NBiotin carboxylase, N-terminal domainDomainInterproscan
PF02786CPSase_L_D2Carbamoyl-phosphate synthase L chain, ATP binding domainDomainInterproscan
PF01607CBM_14Chitin binding Peritrophin-A domainDomainInterproscan
PF01834XRCC1_NXRCC1 N terminal domainDomainInterproscan
PF05380Peptidase_A17Pao retrotransposon peptidase FamilyInterproscan
PF19745FUT8_N_catAlpha-(1,6)-fucosyltransferase N- and catalytic domainsDomainInterproscan
PF05454DAG1Dystroglycan (Dystrophin-associated glycoprotein 1)FamilyInterproscan
PF15613WSDWilliams-Beuren syndrome DDT (WSD), D-TOX E motifFamilyInterproscan
PF00628PHDPHD-fingerDomainInterproscan
PF15612WHIM1WSTF, HB1, Itc1p, MBD9 motif 1MotifInterproscan
PF00439BromodomainBromodomainDomainInterproscan
PF04841Vps16_NVps16, N-terminal regionRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001666FamilyPhosphatidylinositol transfer proteinInterproscan
IPR023393Homologous_superfamilySTART-like domain superfamilyInterproscan
IPR008906DomainHAT, C-terminal dimerisation domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR052035FamilyZinc finger BED domain-containingInterproscan
IPR005482DomainBiotin carboxylase, C-terminalInterproscan
IPR011761DomainATP-grasp foldInterproscan
IPR011764DomainBiotin carboxylation domainInterproscan
IPR005481DomainBiotin carboxylase-like, N-terminal domainInterproscan
IPR005479DomainCarbamoyl-phosphate synthetase large subunit-like, ATP-binding domainInterproscan
IPR050856FamilyBiotin-dependent Carboxylase ComplexInterproscan
IPR016185Homologous_superfamilyPre-ATP-grasp domain superfamilyInterproscan
IPR004549FamilyAcetyl-CoA carboxylase, biotin carboxylaseInterproscan
IPR011054Homologous_superfamilyRudiment single hybrid motifInterproscan
IPR036508Homologous_superfamilyChitin binding domain superfamilyInterproscan
IPR002557DomainChitin binding domainInterproscan
IPR002706DomainDNA-repair protein Xrcc1, N-terminalInterproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR008042FamilyRetrotransposon, PaoInterproscan
IPR027350DomainGlycosyltransferase family 23 (GT23) domainInterproscan
IPR045573DomainAlpha-(1,6)-fucosyltransferase, N- and catalytic domainInterproscan
IPR006644DomainDystroglycan-type cadherin-likeInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR030398DomainDG-type SEA domainInterproscan
IPR008465DomainDystroglycan, C-terminalInterproscan
IPR028941DomainWHIM2 domainInterproscan
IPR018501DomainDDT domainInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR047171FamilyBromodomain adjacent to zinc finger domain protein 1AInterproscan
IPR001487DomainBromodomainInterproscan
IPR036427Homologous_superfamilyBromodomain-like superfamilyInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR018359Conserved_siteBromodomain, conserved siteInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR028942DomainWHIM1 domainInterproscan
IPR006926DomainVps16, N-terminalInterproscan
IPR016534FamilyVacuolar protein sorting-associated protein 16Interproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10658PHOSPHATIDYLINOSITOL TRANSFER PROTEINInterproscan
PTHR46481ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4Interproscan
PTHR18866CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASEInterproscan
PTHR11370DNA-REPAIR PROTEIN XRCC1Interproscan
PTHR22955RETROTRANSPOSONInterproscan
PTHR13132ALPHA- 1,6 -FUCOSYLTRANSFERASEInterproscan
PTHR21559DYSTROGLYCAN-RELATEDInterproscan
PTHR46510BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1AInterproscan
PTHR12811VACUOLAR PROTEIN SORTING VPS16Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005548Molecular Functionphospholipid transporter activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008525Molecular Functionphosphatidylcholine transporter activityInterproscan
GO:0008526Molecular Functionphosphatidylinositol transfer activityInterproscan
GO:0015914Biological Processphospholipid transportInterproscan
GO:0031210Molecular Functionphosphatidylcholine bindingInterproscan
GO:0035091Molecular Functionphosphatidylinositol bindingInterproscan
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0016874Molecular Functionligase activityInterproscan
GO:0008061Molecular Functionchitin bindingInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006284Biological Processbase-excision repairInterproscan
GO:0000012Biological Processsingle strand break repairInterproscan
GO:0003684Molecular Functiondamaged DNA bindingInterproscan
GO:0006487Biological Processprotein N-linked glycosylationInterproscan
GO:0036071Biological ProcessN-glycan fucosylationInterproscan
GO:0046921Molecular Functionalpha-(1->6)-fucosyltransferase activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0002009Biological Processmorphogenesis of an epitheliumInterproscan
GO:0007411Biological Processaxon guidanceInterproscan
GO:0016011Cellular Componentdystroglycan complexInterproscan
GO:0016203Biological Processmuscle attachmentInterproscan
GO:0021675Biological Processnerve developmentInterproscan
GO:0042383Cellular ComponentsarcolemmaInterproscan
GO:0043236Molecular Functionlaminin bindingInterproscan
GO:0016010Cellular Componentdystrophin-associated glycoprotein complexInterproscan
GO:0000228Cellular Componentnuclear chromosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008623Cellular ComponentCHRACInterproscan
GO:0031445Biological Processregulation of heterochromatin formationInterproscan
GO:0045740Biological Processpositive regulation of DNA replicationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0003779Molecular Functionactin bindingInterproscan
GO:0005765Cellular Componentlysosomal membraneInterproscan
GO:0005768Cellular ComponentendosomeInterproscan
GO:0007033Biological Processvacuole organizationInterproscan
GO:0016197Biological Processendosomal transportInterproscan
GO:0030897Cellular ComponentHOPS complexInterproscan
GO:0042144Biological Processvacuole fusion, non-autophagicInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03515REV1; DNA repair protein REV1EC:2.7.7.-
Fatty acid biosynthesisko00061deepkoala
Chromosome and associated proteinsko03036deepkoala
DNA repair and recombination proteinsko03400deepkoala

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