Gene detail

Detailed information of g2312.t2 in Tripedalia maipoensis

Genomic Location: scaffold_11:16943040...16979851
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2312.t2

ATGGAGACTGATGGAGCAGAGTGTCCACTGTGCATGGAGTCGTTAGAGATCGATGATCTGAACTTTTATCCATGTTCCTGTGGATATCAGATCTGCAGATTCTGCTGGCATCGAATAAGGACAGATGAAAATGGTTTGTGTCCTGCTTGTAGAAAGGCTTACTCAGAGGATCCTGCAATCTACAGGCCTTTGACTCAAGATGAAATAGCAAGGATCAACAAGGAACGAAAACAAAGGGAGGCACAACGAAAGCAGAAAATATCAGAGAACAGAAAACATTTATCCAATGTCAGGGTGATTCAGAAGAATCTTCTTTTTGTTGTGGGGCTCTCCCAGAAGCTGGCAGACTCCGAGCTGCTCAAGCGACAAGATTATTTTGGTAAATTTGGAAAAATACAGAAAATAGTAGTTAACCCAAGCACTAACTATGCTGGACCTCAGGGTCCTAGTGCTAGTGCATACATCACTTTCTCCAAAGAAGAGGAAACACTTCGAGCCATTCTCGGCGTAAATAATGTTCACCTCTACGGCCGAACTATAAGAGCATCGCTGGGCACAACCAAGTACTGTACTCACTACTTGAGAAACACACAGTGCCATAAAGTGGACTGCATGTATTTGCACGAGGCGGGTGATGAAAGTGGCAGTTTTACCAAGGAGGATATGCAACAAGGGAAACACCAAATTTACGAAAAAGAACTCTTAGAAAATTATTTAAAGTCAATTCAAAACAAAAGAAAAAGTGAAGACCTTGAGCAGTTCCCCCAGATCCTCGGAGAGGATAAAGAGGAGTGGATGGAGGACGATGCATCAGGCTCGCATGGATCAGCCCTTCCCCCAAAAGCTGCTTGGGCAGACAAAGAAATAAAAACACAAGAAGACAAAATGACGCCGGACATCGAGGAGATTGACAATTTTGATACTAATACAACCATGGTGGAAGTGCCACCTGCCGAACATGGCGTTCAAGATCCCGCCTCCCCAGAAGTAGCATCTCTTGATGTGTTTGAAATGGACGAACCGTACAAGCCGAACGAAAAGCCATTGCACGACGATTGTCGAGAGAGGTTGGATAAAGTTTCACAGCCCAGTTTCTGCGCAGGCTGGGCGACGTCTGGTCAGACTGCCACGACTAATCAGTATCAAGAAGTAGCAACGGAAGACCCTGGTGGAGGGCGCCCCCGTATTTCCTCTTGGTTCGACGATGGACTGGGACTGAACAATCTCCGAGTTGACGCAGACGACGATTTAGGATTTGACCCGTTCACAGAGAGCCATCGCGGGCTGGAGGAGTTTATTGCTTCCAATCCCGATCCATACAATTCTCTTCTTTCAGGCATTTCCAGCCTTTACTGTACTGGTGGGTGGAATCGGCAGTATGATTCAAGCAACCACAGCAGTGGAGTAGCATCCAGCTATCTCCCTGCCTCCGAGTATTCACTGTTTGGAAAAAAAGTTTCAAACACTGGGTCCTTGTTTGATGTGTGGGGTAACATGGCCCCTTATTCACAAGAGTCATCAACGTCTGTATCGCTGACTGGTGATGGCAGTAAGAACGCTTCGTCACTCAACGCGCAGTCTCCGCAGGGAGGAGAGCAGAGTGACATTAAAAGTTGGCAGGACGGTCTACGAGCCCTTCTGCCGAACATTAACATTAGCTTTTCGGCTTCCCTTGATAACTCAGAAGAGGCCAAAGCCTCGCGTCAGAATAGTAGAAAAGATACACCATCATCCAAACCACCACCTGGCTTTGTGCAGGCGGAAGATCAAGGAGACCAGGGGAGGCTACTGCAAGACTCGAGTATCATTTGGTCCAAAATGCGATCAGAAAAGGAGAAGAACAGAAGCCCTCCCGGCCTTGCCATGAGTCAAGCACAAGAGCAGATGTATGCTGCCAAAGTGTCCCAGGACACTTCATTATCGGGAAGAAGTCCACCAGGAGCTTCTTGGAACGCTATCGTCAGTGGACAGACGGGTGTCAGCATTCCAAAATCTACTCAGGAGTCACCACACGTTAATAAGCCAGTCCTGGTGAGCCCCGGAAGTCAGGGAGTTAAACTCTCGGGGGTCGCCAACTCTCCCGTTAGCGGCGTCGGAAAACCGTTCGGAAAGCCGACGACAATGTTCGCCGTTTCTTCGTCTCAGAACACTAACAAGCCCACTGCCAAAGTGAAACCGCTGAAATGCGTTGTGCCTTCCGATGACTTTCTTGTGCCAGCGGTCCCAGTCGCGCCTGGTGGAAATGACCGAAAGTCTGGAATCAATGATCTCGACGATATCGATTTCAACGATCCGTTGCCTTCTGCCAGTGTACATATTGCTACTCGTGCAGTCTCTGATGAAAACGTTAAGGCAAATGAAGAGAATCAAGGACAAGCAAGCTGGAAGAAGTCAAGTAAGAGAAAAAAGAAAAAGAAGGAAAATGGCACTAAAGAAACCGGAAGTACAAAGCAAGACCCAGGAGTCCGCAGTGTCTCCCATGCGCATTCGGTTTCGGAAGGAGAAACGAAGAGAACGGTACTTGAGAGACCGTTGTCAAGAGAGGCCAAGGATAAGACGACTCAAGTTAAAAACGGAAAGACAAAAGTCGATGAGAAGTTCTCAGGGAATGGTGTTAGTCAGCAAGAATTAAAGCTGGGGAAGAGCGCTGAAAAAGTAGAGACCAGGGATATCCTTCGGCCAAAAGAAAAACCTTCTGAAATCAAGGTGGCAATGTCTGGCGCCAAAGATGCATCCAATCTTGAAAAGCAGTTACCACTGTCGGCGAAATCCACACAGCAAGGGATGCGTGTACCCGGTCCCAGGCCACCTAGCCAGCGCGGCAGAGGTATCCCAGTACCTGATTCACCTCCAAGACCTATTGCTCCTATAAGAATTCTGAAGTCCCAGCCACAGCCCACGGGTGGTACAACAACGTCAACTCTTGCTCAGTCTTCCTCACGCTGTGTGGATCCCAATCCTCTGGAAATGTACGATCGTGAGTCACTTGGACGACTGGCAGAATCGACCAAGCTATTGTTGCAGACCGTACTTTCCGAAACGGAGGTGATTAAATCAAACACGGAACAAATCTCTAAGGACCTGAAGGCTGCATTGGACAAGTGCAAGGATCCCCCCCTTACTGTTTCAGACCTTGACAAGCTGAACTGCTTACCTCTGATGGAGATAAAGGAAGAATTGTTGGCAAAGCAGGGGGACAATTCAGTCATCGACACGTCAGATTTGGAGAAACAGGTGGAGTCGGCTCGACGCGAGGCCAAGTTGTTGGAAGTAAAGCTAAATGACGTCATACGAAAAAATATGGCCAGTGACATAGAAACCCTGAGGAAGAAAGGTCCCGAACCAAAACAGAAAAATGGCAAATTGTCGCAAGTAAAGAAGTAA

Transcript

g2312.t2

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003288 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14570 all species →	zf-RING_4	RING/Ubox like zinc-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039780 all species →	Family	CCR4-NOT transcription complex subunit 4	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR034261 all species →	Domain	CNOT4, RNA recognition motif	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR039515 all species →	Domain	NOT4, modified RING finger, HC subclass (C4C4-type)	Interproscan
IPR003954 all species →	Domain	RNA recognition motif domain, eukaryote	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12603 all species →	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0030014 all species →	Cellular Component	CCR4-NOT complex	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g2312.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.