Gene detail

Detailed information of g23161.t1 in Acropora digitifera

Genomic Location: chr11Alt:1821714...1842214
NR annotation: XP_029211270.2, ankyrin repeat and IBR domain-containing protein 1-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g23161.t1

ATGGGAAGCTCATCATCGAAATTCCGGAAAGCGCTGCAAAGGGGTGAAGGTGTTGAAGCTATGCACATTTACCTGAAACACCCTGACATTAAGCGAAATCTTGATCCCAATAATAGCTTCGGTGTGAACCATAGACACAATACTGCATTACACTATGCCGCTTTACATGGTATAAAGGCATTTGTGCGTGAATTTCTAGAAGAAAGAGCAAACCCCAATATTCGCAACGAAATGGGACAGAATTCTTTTCACTGCATTTGTCTAACAAACAGAGGGACTGAAGGATCTGTGGATAAAACCAGGGCTGAGTGTCTAACCAATCTTTTAAAGTGGAATTGGAGCAATCAAGACGAAGCAACCGCGGAGATAGACGCAAAAGACGAGTTTGGGAATACACCACTGCATTATGCTGCTAGATCAGGATTGTATCACTGTGTCCAGCTCTTGGTTGCTGATGGAGCATCACTTTATGAAGAAAACCAAAATGGTGATACTGCTTGTGACTTTGCCATCAAGGGTGGATTCAATGCCATTGCATCATTTTTGGAGTCCAGAATGGTTTTCTCTGAAAGTGCAAGTCCTATTGCTGCTGATCTTGAAGAACCAGTTTTTAACCAGGATGACCTGAAACAGTACCGGGGTCTCTGTGCACAGGATCTTCAAGAAGCCAAGGATTTGATGCTTGTAGAAACTGCCGACATGCTTAGGGTGCCATTATTTACTGCTGAAGGTCTCTTACGGAATCATGATTGGTCCAAGGAAGCTCTGATAGAAGCCTGGATGGCTGATCCAGTGTCTGCTTGTAAAAATGCTGGTGTCACTTTGCCTGACAATCATGTGATTGGTAAAGCAGAACTTGAAGAGAGGGCAAAGATTTCAGTCAAGAGCAACTTTAGAAATACTGAAATCTGCTCTATTTGTGATGGAGAAATTGTGTATGAGGATGTTTCTTTGTCACTTTCTTGTGGGCATGAATTCTGTCGTTCATGTTGGGAAAGTTATTTAAATGTGAAAATAAAAGAAGGAAAGGCCCATAACATCCAATGCCCAGGGTTTGATTGCAGTTCATTGGTACCTGTGGAAACTATTGAAAGCCTTGTTTCAAGAGAAATGGCGAGTAGATATCTTCAATTTGATATAAAGGCCTTCGTAGAGAGTAATCCTAATTTAAAATGGTGTCCTTCCCCTGGTTGTGGTCAAGCTGTGAGGTTACCATCAAGCATGCTGCCATCTTCACCAGTAGCTGTGGATTCCTACTCATCAAAAGAAACAGAAGCAATGATTGTAGATTGTGGCAAGGGTCATTTCTTTTGCTGGCATTGTTTGCATGAGGCCCATGCACCTTGCAGCTGTGAACTGTGGAGTAATTGGCTGAAGAAAATTGCAGAGATGATACCAAAGATACCAATGACTAAAGATGTCTCTGAATGTCCAGAGACAGAGACTGTAGCAAATACTCTATGGCTGGTGACAAATTCCAAACCCTGCCCAAACTGCAAGTCTCCTATTCAAAAGAATGAAGGATGTAACCATATGAAATGCTCAAAGTGCAAATACGAATTTTGTTGGGTTTGTCTGGAACAGTGGAAAAAACACAGCTCAGCCACTGGCGGATATTTTAGGTGTAATAGATTTGAGGTTGTTCAAAAGGTGGAGTCAGAATCTGCTAAGCTAGTCACAGAGGCAAGCCAAAGGAATGCTCAAGTTCAAGAATTAAACTGTTTTCTACATTACTACTCTCGCTTCAAGAATCATGAAAATAGCTATAAGTTTGAAGAACCTTTACTTAGTACAGCAAAAGATAAAATGACTGCTTTGGCACTTCAAGCTATGGAAACGGCTGCCACATCATTTGAAAACCCTGACACATCATTCATTGAGGATGCAGTACATAAGTTGCTGAGTGCAAGACGAGTGCTGCGATCTTCTTATCCTTATGGTTATTTTCTAACTGGCAACATGGACAAGAAAGCAATTTTTGAGTCCATGCAGACTGAGGTAGAGGAAGCCACAGAAACTCTTTCTCAAATGGTAGCACGGCCTTACCTCCGAACACCACGCGCAAGGGTTATACAAGTCACTCAGCTTCTGCATAGGAAGCAACAAGACTTTCTGTTGGCTTTGTCTCGTGGAGTTATTCCAGATGAAATTGATCAGAGTGGGTTAGAGCCCAGGTTAAGTCTTGTTTCTCCATTGGATGCCATGCCAGACAGTGAGTCTGATGAAGATGAGGACAATTATGATGAAGTTCATTCAATTCTGGGCAAACGACTGCTGGCAAGGTTGGAATTGAGGGAACATCTTGCCAATGGCGAGACAACAGCTCAAGAAGAACAAGGAGCTGGCACAACCGAGAAATGGAACTGTGATGCTATTCACAAAAAGTTTAATTTAACTTCTGGCCACTTGAGCAGACCAAATGGAGCTCACAAGATAAGAAACAGGATGAAAAGACAACGCAGACAAAGCCAGCCAGTTGAGAATGACGAGGAGGTGGACATTGATTTCATGAGAGCTATTCAGTTGTCCTTGTTACAGCACAGTACACCAGCTAATGAGCACAGGTGCCGTTCATCTTCATCAAGCAGCTCAGCTGGTTCAGGCCAAGATCAAGCCCAGGGATTGGGGGGTGAACAGGATATCTCAGCCTTCTCTGACAGTACTTCCTTACAGAAAGCAATTGAATTATCGCTCAGAGAGTCTGCTGCAACAGACTTCTCTTCTTTGCCTCATAAAAGTGATGATGATGATGACGAACTGAAAAGAGCTATCAAATTATCCCTGCTGGACAGTGGTCTCTCTGCAATAAGAAATGATGGCAGTGCAAACAAAGGCAGTTACCCACAGCAACAGAATACAGAATGTCAGGATAGCGATAGTAACAGCGAATATGACGTTCACTTTTAG

Transcript

chr11Alt.g23161.t1

AACGCATAACACCCGATCAATAATATGCTTTCGTTTGGTTAAGCACGTGTCACGGCGAAGTCATACAGTAGTGTGGACACCAGGACGTTTTGATTTGTTATTTCAACTTTTTTCATTCATTTCACTGCGAGTTTATCTTGCTTTATCAATGGGAAGCTCATCATCGAAATTCCGGAAAGCGCTGCAAAGGGGTGAAGGTGTTGAAGCTATGCACATTTACCTGAAACACCCTGACATTAAGCGAAATCTTGATCCCAATAATAGCTTCGGTGTGAACCATAGACACAATACTGCATTACACTATGCCGCTTTACATGGTATAAAGGCATTTGTGCGTGAATTTCTAGAAGAAAGAGCAAACCCCAATATTCGCAACGAAATGGGACAGAATTCTTTTCACTGCATTTGTCTAACAAACAGAGGGACTGAAGGATCTGTGGATAAAACCAGGGCTGAGTGTCTAACCAATCTTTTAAAGTGGAATTGGAGCAATCAAGACGAAGCAACCGCGGAGATAGACGCAAAAGACGAGTTTGGGAATACACCACTGCATTATGCTGCTAGATCAGGATTGTATCACTGTGTCCAGCTCTTGGTTGCTGATGGAGCATCACTTTATGAAGAAAACCAAAATGGTGATACTGCTTGTGACTTTGCCATCAAGGGTGGATTCAATGCCATTGCATCATTTTTGGAGTCCAGAATGGTTTTCTCTGAAAGTGCAAGTCCTATTGCTGCTGATCTTGAAGAACCAGTTTTTAACCAGGATGACCTGAAACAGTACCGGGGTCTCTGTGCACAGGATCTTCAAGAAGCCAAGGATTTGATGCTTGTAGAAACTGCCGACATGCTTAGGGTGCCATTATTTACTGCTGAAGGTCTCTTACGGAATCATGATTGGTCCAAGGAAGCTCTGATAGAAGCCTGGATGGCTGATCCAGTGTCTGCTTGTAAAAATGCTGGTGTCACTTTGCCTGACAATCATGTGATTGGTAAAGCAGAACTTGAAGAGAGGGCAAAGATTTCAGTCAAGAGCAACTTTAGAAATACTGAAATCTGCTCTATTTGTGATGGAGAAATTGTGTATGAGGATGTTTCTTTGTCACTTTCTTGTGGGCATGAATTCTGTCGTTCATGTTGGGAAAGTTATTTAAATGTGAAAATAAAAGAAGGAAAGGCCCATAACATCCAATGCCCAGGGTTTGATTGCAGTTCATTGGTACCTGTGGAAACTATTGAAAGCCTTGTTTCAAGAGAAATGGCGAGTAGATATCTTCAATTTGATATAAAGGCCTTCGTAGAGAGTAATCCTAATTTAAAATGGTGTCCTTCCCCTGGTTGTGGTCAAGCTGTGAGGTTACCATCAAGCATGCTGCCATCTTCACCAGTAGCTGTGGATTCCTACTCATCAAAAGAAACAGAAGCAATGATTGTAGATTGTGGCAAGGGTCATTTCTTTTGCTGGCATTGTTTGCATGAGGCCCATGCACCTTGCAGCTGTGAACTGTGGAGTAATTGGCTGAAGAAAATTGCAGAGATGATACCAAAGATACCAATGACTAAAGATGTCTCTGAATGTCCAGAGACAGAGACTGTAGCAAATACTCTATGGCTGGTGACAAATTCCAAACCCTGCCCAAACTGCAAGTCTCCTATTCAAAAGAATGAAGGATGTAACCATATGAAATGCTCAAAGTGCAAATACGAATTTTGTTGGGTTTGTCTGGAACAGTGGAAAAAACACAGCTCAGCCACTGGCGGATATTTTAGGTGTAATAGATTTGAGGTTGTTCAAAAGGTGGAGTCAGAATCTGCTAAGCTAGTCACAGAGGCAAGCCAAAGGAATGCTCAAGTTCAAGAATTAAACTGTTTTCTACATTACTACTCTCGCTTCAAGAATCATGAAAATAGCTATAAGTTTGAAGAACCTTTACTTAGTACAGCAAAAGATAAAATGACTGCTTTGGCACTTCAAGCTATGGAAACGGCTGCCACATCATTTGAAAACCCTGACACATCATTCATTGAGGATGCAGTACATAAGTTGCTGAGTGCAAGACGAGTGCTGCGATCTTCTTATCCTTATGGTTATTTTCTAACTGGCAACATGGACAAGAAAGCAATTTTTGAGTCCATGCAGACTGAGGTAGAGGAAGCCACAGAAACTCTTTCTCAAATGGTAGCACGGCCTTACCTCCGAACACCACGCGCAAGGGTTATACAAGTCACTCAGCTTCTGCATAGGAAGCAACAAGACTTTCTGTTGGCTTTGTCTCGTGGAGTTATTCCAGATGAAATTGATCAGAGTGGGTTAGAGCCCAGGTTAAGTCTTGTTTCTCCATTGGATGCCATGCCAGACAGTGAGTCTGATGAAGATGAGGACAATTATGATGAAGTTCATTCAATTCTGGGCAAACGACTGCTGGCAAGGTTGGAATTGAGGGAACATCTTGCCAATGGCGAGACAACAGCTCAAGAAGAACAAGGAGCTGGCACAACCGAGAAATGGAACTGTGATGCTATTCACAAAAAGTTTAATTTAACTTCTGGCCACTTGAGCAGACCAAATGGAGCTCACAAGATAAGAAACAGGATGAAAAGACAACGCAGACAAAGCCAGCCAGTTGAGAATGACGAGGAGGTGGACATTGATTTCATGAGAGCTATTCAGTTGTCCTTGTTACAGCACAGTACACCAGCTAATGAGCACAGGTGCCGTTCATCTTCATCAAGCAGCTCAGCTGGTTCAGGCCAAGATCAAGCCCAGGGATTGGGGGGTGAACAGGATATCTCAGCCTTCTCTGACAGTACTTCCTTACAGAAAGCAATTGAATTATCGCTCAGAGAGTCTGCTGCAACAGACTTCTCTTCTTTGCCTCATAAAAGTGATGATGATGATGACGAACTGAAAAGAGCTATCAAATTATCCCTGCTGGACAGTGGTCTCTCTGCAATAAGAAATGATGGCAGTGCAAACAAAGGCAGTTACCCACAGCAACAGAATACAGAATGTCAGGATAGCGATAGTAACAGCGAATATGACGTTCACTTTTAGCTGAAATTAAATATAGATTAAAACTAGGTTTCATTCTTTAAGGACAAGAAACTGAAATGATCTCTCTTTGTATTTGATTTGCTAACGATGACTCTTAATGATGGGCGCAAATGGTGATCTTTGTTGTGGTATAGCCTCCTTTGCAGATGTTCTTTTCACTTGTGAAGCGATGTTGAATATTGTGACAAGTCAAGAATATTTGTGAAGGAGGCTAGTGATAACATGCTCAATTTTACTTGAATCTGCAATCACTTTTTTATATAAACAATGGATGTAGCAGTTTTTAGAATTAAGGTACATGGCAACATCCTTACTGTGGTTATTTTCGGAATTTTCATAGGATACCCAAGGTACATTGAAGCAATTTCTCTCAGATATTTGCAAAAGAATTGAGTTTTAATATTAGGCCAAAGGCTCTGACAGCTTATTGGGGGCATTGCACACATTTTCAATGTTGATGATCAAGGTTTGCAAGTTTTTCTCAGAAGTAACAAAAGTACAATCCTTTCCAAGTTAGGTGCTGATGCAGTTGCAATCCACTTTTCAAGATTCTCACTCTCACTCAAGGAATGGAAACCCCACACATCAGTAAGAGAAAGTGAGTTGACACATTCCATGTGCTGGTAAGCTACAAAAGTTGGTCTGCTGCATATAGAAACTTATTATCCTTAAAGGTGGTACCTGAATTATTCAAGGAGGAGGTTTTGTCATTTTTGTTGTCTGTTGTTTTGTGCAACCAGTCTTAAAAGGTCTTCCATGTAAGTTGTTTTTGAGTTCACTGAGTCCACGTTCAAGTTTTTTGACTGTTGTTGTTTTACACTCTACAAAAAAAAAACGTTTTCTGCAAGAAAAAACCCATCGCTTTACCCACTTTTAACAGATTTATGCTTGTAAGAAGTAGGATATTTTACAGTTCTGTAGTTTTTGTAAAAAATAATAATTATTTACTGTTCTCATAGGTTGAAATACCATCTATGTAAAATTAATCATGTTGTAAGTAAATAATGAGTTTGGTTCTCCAAGTTGGTAGAACGGAGGGAGAGGGAGTTTTGATGATATAGTAAATGTTTTTTTTGAATTTTCAATTATTATTAAAGTTTTAAAATTCTTGTAACAGAATTCTTAGGTTATTGTACTTCAACCAGATAGTTGTCAATGTTGTGAATAAATAGAGAAATAAATTAAGATTACATTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P2G1	Ankyrin repeat and IBR domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ANKIB1 PE=1 SV=3
Q6ZPS6	Ankyrin repeat and IBR domain-containing protein 1 OS=Mus musculus OX=10090 GN=Ankib1 PE=1 SV=2
Q1L8G6	Ankyrin repeat and IBR domain-containing protein 1 OS=Danio rerio OX=7955 GN=ankib1 PE=3 SV=1

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF19422 all species →	Ariadne	Ariadne domain	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF01485 all species →	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003903 all species →	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR044066 all species →	Domain	TRIAD supradomain	Interproscan
IPR031127 all species →	Family	E3 ubiquitin ligase RBR family	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR045840 all species →	Domain	Ariadne domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR002867 all species →	Domain	IBR domain	Interproscan
IPR047564 all species →	Domain	Ankyrin repeat and IBR domain-containing protein 1, Rcat domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11685 all species →	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11967	ANKIB1; ankyrin repeat and IBR domain-containing protein 1	EC:2.3.2.31	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.