Gene detail

Detailed information of g232.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCH9705751.1, 1,2-phenylacetyl-CoA epoxidase subunit A [Pseudomonadota bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P76077	1,2-phenylacetyl-CoA epoxidase, subunit A OS=Escherichia coli (strain K12) OX=83333 GN=paaA PE=1 SV=1
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05138	PaaA_PaaC	Phenylacetic acid catabolic protein	Domain	Interproscan
PF01207	Dus	Dihydrouridine synthase (Dus)	Family	Interproscan
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00153	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan
PF09588	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan
PF01607	CBM_14	Chitin binding Peritrophin-A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012347	Homologous_superfamily	Ferritin-like	Interproscan
IPR007814	Family	1,2-phenylacetyl-CoA epoxidase, subunit A/C	Interproscan
IPR009078	Homologous_superfamily	Ferritin-like superfamily	Interproscan
IPR052703	Family	Aromatic CoA oxygenase/epoxidase components	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR035587	Domain	DUS-like, FMN-binding domain	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR053134	Family	RNA-directed DNA polymerase homolog	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050502	Family	Eukaryotic RNA-binding	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR023395	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR018108	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR011335	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR051703	Family	NF-kappa-B Signaling Regulator	Interproscan
IPR011604	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR019080	Domain	YqaJ viral recombinase	Interproscan
IPR002557	Domain	Chitin binding domain	Interproscan
IPR051940	Family	Chitin-binding developmental regulator	Interproscan
IPR036508	Homologous_superfamily	Chitin binding domain superfamily	Interproscan
IPR029016	Homologous_superfamily	GAF-like domain superfamily	Interproscan
IPR052035	Family	Zinc finger BED domain-containing	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30458	PHENYLACETIC ACID DEGRADATION PROTEIN PAA	Interproscan
PTHR11082	TRNA-DIHYDROURIDINE SYNTHASE	Interproscan
PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	Interproscan
PTHR48025	OS02G0815200 PROTEIN	Interproscan
PTHR46609	EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR23301	CHITIN BINDING PERITROPHIN-A	Interproscan
PTHR46481	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0010124	Biological Process	phenylacetate catabolic process	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0008061	Molecular Function	chitin binding	Interproscan