Gene detail

Detailed information of g23217.t2 in Acropora digitifera

Genomic Location: chr11Alt:2581442...2602560
NR annotation: XP_044164252.1, thioredoxin domain-containing protein 3 homolog isoform X1 [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g23217.t2

ATGGCGTACATAAAGAAGAACCCAGATGCACTAAAACCATTACAGGTTGAAATTAAAACTCAAGAACAGTGGGATGAGTTGTTAACAAAAGAGGGATTGATAGTTGTGGATACTTATGCCGCCTGGTGTGGACCTTGTAAAGCCATTGTCAGTTCCTTCAAGAGACTAAAGAATGAACTTGGAGATGACCTCCTTGTGTTTGCTACAGCTGAAAGTGATTCCATTGATTCTTTGGAGGCGTACAGAATGAAGAGCCAGCCAACATTCCTTTTTTATGCTGGAGGCATTCTTATCAATGTTGTAAGGGGATGTAACTGCCCGTTGTTGATCAAGACTATTCGCAGTGAGCTGGAGAAAGAACACAAAGTCATCAACGGGACAAGTCAAAGAGTTGCGTTTGTTGATCAAGAAGCTTTGAAAGAGCCAGTAATGGATGAACAAAAAGATGAGAAATTGGAAGAAGAGGAAGAAGAAGAAGAATTAGCTGAGCAGATGGCAGTTAAGGTTCGAAGTTTGGATCAGGTAGTAAAGGAGAAAGCTGAGGAAGTGGAGTTACCCAAGCAGGTCACTGTAGCCATCATTAAACCTGATGCTGTCAAAGCTGGACTTGTCGATGAAATCATACAGAAGGTTGAAGATGCTGGAATGGAAGTTTTGAAAAAGGAGGAAAAGGTCCTGTCAAAAGAGGAGGCTGCAGAATTTTACAAGCAGCATGAAGGATCTGAACACTTTGATCAACTGGTTGAATTCATGTCAAGTGGTCCTTGTATGACTCTTCTGCTCAGCAAAGCAGGCGACACCCCAGATGCCGCAGATAGTGCCATTGATTATTTCCGTGATCTGATTGGGCCAAAAGATGTCAATATTGCAAAGGAGGAAGCTCCTGCAAGCTTGAGAGCTCTCTATGGTACTGACACAGTGATGAATGCAGTCCATGGCTGTGACTCAGCTGAAAGTGCAGCTAGAGAGCTTGCTTTCTTTTATCCTGACTTTGTGGCACCTACAATAGTTCAAAGAAGGAAAAAGAAGCGTCTGCAGAGAACACTTGCCCTTATCAGACCAGATGCATTGAAGACTCGCAAAGATTCCATACTGAAAAAGATTGAAGAGGCAGGGTTTACTATCGCTATGTCAAAAGAAATGACATTATCAAAGGAACAAGCTGAAGAGTTTTATGCAGAGCATAAGGATGCAGAATTCTTTGAGACCTTGGTTACCAACATGACTAGTGGACCAATGATGGCTTTATGTCTGGCCCGTGAAGATGCTGTGGAGGGTTGGCGGGAATTACTTGGACCCAAAGATATCTCAGAAGCTGTAGACCAGGCCCCAGAAAGCTTACGGCAGCAGTTCCATGTAGAAGAGAGTCCTGTTAATCCCCTGCATGGATCAGATTCAACTGTTGCCGCAGAAAAGGAAATCCGGCAGTTGTTCCCTGTTCAGTCGACATTAGCAGTTATTAAACCTGAAATGGAACCAGATAAGAGAGACGATGTTATTCAGAGAATCAAAGAAGCTGGTTTCAAGATTCAGTTTGAAAAGGAGGTGACACTGACTAAAGAACTAGCATCTCAGTTCTACCATGAACATGAAGGGAAAGACTTCTTTGATGGACTTACAGAGCACATGGCCAGTGGACCAACATTATTTATGGTGCTTACAAGAGAGGATGCTGTCACTGGCTGGAGAGCAATGATGGGCCCCACAGATCCACAGCAAGCTTTAGAGGTGGCACCAAACTCGCTTCGAGCACAGTTTGGCACAGATGCAATGAAAAATGCTGTGCATGGCAGTTCCACTGTGGAGAAGGCTGAGATGGTTATTAAAGAGTTCCTACCTGAAGTTGAAATTTTGCCAGATGGGACAGTTCGAGTGCCAAAAGATGAAGCCCCTGAGCCTGATAAAGGCAAGAGCGAGCAGGAGGATATACAAAGAATATCCGATCAATTTAGTGAGCCTTTGGGAATGGAAGATGGCAGCATCCCTGATGATGCAATCAAAGCATCATCTGAACTTGATGATCAGCACAGTGCATCAAGAGCTCGTCTGAATGCCAAGCCTGCTGAAGAAAAGATGGGAGCTTGGGTTCCACTGGAGAGTGATGAAAATCAGTGGCTCCAGGTGGATCTTGGGAAGGTGACAAGGGTCACAAAGATAGCTTTACAAGGAGAAGCTGGCGAAAGCTCACGGCACGTCAAGGAGTTTGCTTTCTCCTGCAGTCTTGATGGGGAAGGGTTTTTGCCGTACAGAGAGGACAATGCTGAAAAGGTCTTTGAGGGAAGTACAGATCAAGAAACGGTTGTCACTACCAGCCTTAAAAACCCATTAATAACTCAGTTTGTAAAACTGCATCCCAAAACCTGGAATGAAGGCATTGCAATGAGAACTGAGTTTTATGGATGCAGTGCAGATACATACAGTGAAGCTTTGGGAATGGAAAATGGTAACATCCCTGATGATGCAATCACAGCATCAACTGAACTTGATGATCAGCACAGTGCATCAAGAGCTCGCCTGAATGCCAAGCCTGATGGAGAAAAGATGGGAGCCTGGGTTCCACTGGAAAGTGATGAAAACCAGTGGCTCCGGGTGGATCTTGGGAAGGTTGCAGAGATAACAAAAGTTAGCACCCAGGGGGGTGGTGAAGAGTCAGAACAGCGTGTTGTTAGCTTTGTCTTGGCATTCAGCGAAGATCAAGAAAACTTTCTTGATTATCAAGAAAATGGTGATGTAAAGGTATTTGAAGGTAACACTGATGGCAACACGACAGTGAGTCACTGGTTGGTTCAACCTGTCAGAGCACGCTTCTGCACTGTGAAACCCAAGACATGGAATGAACAGATTGCGTTAAGATTAGAACTTTATGGAAAAGTGGCATTAGATGACCTTCCTGTTGCAGATAAGTTGCCAGAAGAGGATGAAGCCGTACAACCACAGGACACCCAATATGGAGAAGAAAGTGCGGAGAATCAAGAAGTTCCAGCCCAAGAAAGCACCGAAGCAGTCCCTGAGGCTGAAGAAACTGCTGAGGTTTCTAATGAGGTTAAAGAGAGTCCAAGCGAGGAAGGCAAAGCAGACGAAGGAGATGAAGAGGTTGCTAAAGAAGAAGCGGTCGACGAAAACGGTACGGACCAAGGGAAGAGTATCGAAGATGCAAATGCTGAAGGCGAACACGAGGCGGGTCAGGTTGAGGACGAAGTGAAGGAGGGTGTAGACGACAATGCCAAAGAAGGTGAAGGGCAAGATACGGAAGAGGTTAAGGGAGAAAATGCAGATGAAGGAAGTAAGCCAACCGAGGCAGAAACAGGAGAGCAAAACGCAGACGAAGAAGGAGCGGAAAAATCCGAGGAGACTGCTGAAACTGCGGAGGAAGTCAAAGCAGCCGAGGGTGACCAAGCAGATAACAACTAA

Transcript

chr11Alt.g23217.t2

CATGTTGTAGCTAAGGAGCGAGATCCAAAATGGCGTACATAAAGAAGAACCCAGATGCACTAAAACCATTACAGGTTGAAATTAAAACTCAAGAACAGTGGGATGAGTTGTTAACAAAAGAGGGATTGATAGTTGTGGATACTTATGCCGCCTGGTGTGGACCTTGTAAAGCCATTGTCAGTTCCTTCAAGAGACTAAAGAATGAACTTGGAGATGACCTCCTTGTGTTTGCTACAGCTGAAAGTGATTCCATTGATTCTTTGGAGGCGTACAGAATGAAGAGCCAGCCAACATTCCTTTTTTATGCTGGAGGCATTCTTATCAATGTTGTAAGGGGATGTAACTGCCCGTTGTTGATCAAGACTATTCGCAGTGAGCTGGAGAAAGAACACAAAGTCATCAACGGGACAAGTCAAAGAGTTGCGTTTGTTGATCAAGAAGCTTTGAAAGAGCCAGTAATGGATGAACAAAAAGATGAGAAATTGGAAGAAGAGGAAGAAGAAGAAGAATTAGCTGAGCAGATGGCAGTTAAGGTTCGAAGTTTGGATCAGGTAGTAAAGGAGAAAGCTGAGGAAGTGGAGTTACCCAAGCAGGTCACTGTAGCCATCATTAAACCTGATGCTGTCAAAGCTGGACTTGTCGATGAAATCATACAGAAGGTTGAAGATGCTGGAATGGAAGTTTTGAAAAAGGAGGAAAAGGTCCTGTCAAAAGAGGAGGCTGCAGAATTTTACAAGCAGCATGAAGGATCTGAACACTTTGATCAACTGGTTGAATTCATGTCAAGTGGTCCTTGTATGACTCTTCTGCTCAGCAAAGCAGGCGACACCCCAGATGCCGCAGATAGTGCCATTGATTATTTCCGTGATCTGATTGGGCCAAAAGATGTCAATATTGCAAAGGAGGAAGCTCCTGCAAGCTTGAGAGCTCTCTATGGTACTGACACAGTGATGAATGCAGTCCATGGCTGTGACTCAGCTGAAAGTGCAGCTAGAGAGCTTGCTTTCTTTTATCCTGACTTTGTGGCACCTACAATAGTTCAAAGAAGGAAAAAGAAGCGTCTGCAGAGAACACTTGCCCTTATCAGACCAGATGCATTGAAGACTCGCAAAGATTCCATACTGAAAAAGATTGAAGAGGCAGGGTTTACTATCGCTATGTCAAAAGAAATGACATTATCAAAGGAACAAGCTGAAGAGTTTTATGCAGAGCATAAGGATGCAGAATTCTTTGAGACCTTGGTTACCAACATGACTAGTGGACCAATGATGGCTTTATGTCTGGCCCGTGAAGATGCTGTGGAGGGTTGGCGGGAATTACTTGGACCCAAAGATATCTCAGAAGCTGTAGACCAGGCCCCAGAAAGCTTACGGCAGCAGTTCCATGTAGAAGAGAGTCCTGTTAATCCCCTGCATGGATCAGATTCAACTGTTGCCGCAGAAAAGGAAATCCGGCAGTTGTTCCCTGTTCAGTCGACATTAGCAGTTATTAAACCTGAAATGGAACCAGATAAGAGAGACGATGTTATTCAGAGAATCAAAGAAGCTGGTTTCAAGATTCAGTTTGAAAAGGAGGTGACACTGACTAAAGAACTAGCATCTCAGTTCTACCATGAACATGAAGGGAAAGACTTCTTTGATGGACTTACAGAGCACATGGCCAGTGGACCAACATTATTTATGGTGCTTACAAGAGAGGATGCTGTCACTGGCTGGAGAGCAATGATGGGCCCCACAGATCCACAGCAAGCTTTAGAGGTGGCACCAAACTCGCTTCGAGCACAGTTTGGCACAGATGCAATGAAAAATGCTGTGCATGGCAGTTCCACTGTGGAGAAGGCTGAGATGGTTATTAAAGAGTTCCTACCTGAAGTTGAAATTTTGCCAGATGGGACAGTTCGAGTGCCAAAAGATGAAGCCCCTGAGCCTGATAAAGGCAAGAGCGAGCAGGAGGATATACAAAGAATATCCGATCAATTTAGTGAGCCTTTGGGAATGGAAGATGGCAGCATCCCTGATGATGCAATCAAAGCATCATCTGAACTTGATGATCAGCACAGTGCATCAAGAGCTCGTCTGAATGCCAAGCCTGCTGAAGAAAAGATGGGAGCTTGGGTTCCACTGGAGAGTGATGAAAATCAGTGGCTCCAGGTGGATCTTGGGAAGGTGACAAGGGTCACAAAGATAGCTTTACAAGGAGAAGCTGGCGAAAGCTCACGGCACGTCAAGGAGTTTGCTTTCTCCTGCAGTCTTGATGGGGAAGGGTTTTTGCCGTACAGAGAGGACAATGCTGAAAAGGTCTTTGAGGGAAGTACAGATCAAGAAACGGTTGTCACTACCAGCCTTAAAAACCCATTAATAACTCAGTTTGTAAAACTGCATCCCAAAACCTGGAATGAAGGCATTGCAATGAGAACTGAGTTTTATGGATGCAGTGCAGATACATACAGTGAAGCTTTGGGAATGGAAAATGGTAACATCCCTGATGATGCAATCACAGCATCAACTGAACTTGATGATCAGCACAGTGCATCAAGAGCTCGCCTGAATGCCAAGCCTGATGGAGAAAAGATGGGAGCCTGGGTTCCACTGGAAAGTGATGAAAACCAGTGGCTCCGGGTGGATCTTGGGAAGGTTGCAGAGATAACAAAAGTTAGCACCCAGGGGGGTGGTGAAGAGTCAGAACAGCGTGTTGTTAGCTTTGTCTTGGCATTCAGCGAAGATCAAGAAAACTTTCTTGATTATCAAGAAAATGGTGATGTAAAGGTATTTGAAGGTAACACTGATGGCAACACGACAGTGAGTCACTGGTTGGTTCAACCTGTCAGAGCACGCTTCTGCACTGTGAAACCCAAGACATGGAATGAACAGATTGCGTTAAGATTAGAACTTTATGGAAAAGTGGCATTAGATGACCTTCCTGTTGCAGATAAGTTGCCAGAAGAGGATGAAGCCGTACAACCACAGGACACCCAATATGGAGAAGAAAGTGCGGAGAATCAAGAAGTTCCAGCCCAAGAAAGCACCGAAGCAGTCCCTGAGGCTGAAGAAACTGCTGAGGTTTCTAATGAGGTTAAAGAGAGTCCAAGCGAGGAAGGCAAAGCAGACGAAGGAGATGAAGAGGTTGCTAAAGAAGAAGCGGTCGACGAAAACGGTACGGACCAAGGGAAGAGTATCGAAGATGCAAATGCTGAAGGCGAACACGAGGCGGGTCAGGTTGAGGACGAAGTGAAGGAGGGTGTAGACGACAATGCCAAAGAAGGTGAAGGGCAAGATACGGAAGAGGTTAAGGGAGAAAATGCAGATGAAGGAAGTAAGCCAACCGAGGCAGAAACAGGAGAGCAAAACGCAGACGAAGAAGGAGCGGAAAAATCCGAGGAGACTGCTGAAACTGCGGAGGAAGTCAAAGCAGCCGAGGGTGACCAAGCAGATAACAACTAATTTTTGAACAGCTGTGTTTCTCACTTGTCAAGATGGTGGTTCATTACCTTTAAACAGTGGTCGAGCCTGTGGGCCGACGAAACATTTAGAGATGTCATTTTCCATTTGTCCACCAAAAAAATATGTATATAGAGCATTTCTTTCGAAAATGGTGTTGTATATAGTTTATTTAATAAACTTACAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P90666	Thioredoxin domain-containing protein 3 homolog OS=Heliocidaris crassispina OX=1043166 GN=NME8 PE=1 SV=1
Q95YJ5	Thioredoxin domain-containing protein 3 homolog OS=Ciona intestinalis OX=7719 GN=CiIC3 PE=2 SV=1
Q6IRC5	Thioredoxin domain-containing protein 6 OS=Xenopus laevis OX=8355 GN=nme9 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00334 all species →	NDK	Nucleoside diphosphate kinase	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00085 all species →	Thioredoxin	Thioredoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR034907 all species →	Domain	Nucleoside diphosphate kinase-like domain	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR036850 all species →	Homologous_superfamily	Nucleoside diphosphate kinase-like domain superfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR001564 all species →	Family	Nucleoside diphosphate kinase	Interproscan
IPR051766 all species →	Family	Thioredoxin domain-containing protein	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46135 all species →	NME/NM23 FAMILY MEMBER 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004550 all species →	Molecular Function	nucleoside diphosphate kinase activity	Interproscan
GO:0006183 all species →	Biological Process	GTP biosynthetic process	Interproscan
GO:0006228 all species →	Biological Process	UTP biosynthetic process	Interproscan
GO:0006241 all species →	Biological Process	CTP biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19868	NME8, TXNDC3; thioredoxin domain-containing protein 3	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.