Gene detail

Detailed information of g23232.t2 in Acropora digitifera

Genomic Location: chr11Alt:2760188...2766052
NR annotation: XP_029202665.2, threonine synthase-like 2 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr11Alt.g23232.t2

ACTTTCTCCCTTTGAGTCTTTGCTCGGGTAGTTTTTCTCTCAGAAGAAAATGAAGTACAGAAGCACCCGAGGGAAAGTTCAAACTTCATTGTTTGAAGATGTGCTTTTCAGTGGATATGCCAGCGATGGTGGTTTGTTCATGCCGGAGAAGATTCCAGTTGTGGATAAAACTACTTTGGAGAAGTGGAAAGAATTGTCGTACTTAGATCTTACTAAAAGGATCATGTCATTGTTCATTCCACCAGAAGAAATCAGTTCTAAAGAGTTGAATGACATTGTGATTAAGGCATTTGACAATTTTGGACATAAAGATATTGTTTGCTTGACAGCAGTTAGTAATTTTAACATACTTGAACTATTTCATGGGAAGACCCTGGCATTCAAGGATTATGCACTGGCTACAGTTGGTATGTTTATAGACCATTTCCTCAACAAAAGAAAGGAGAATACGATAATTCTTGTTGGAACATCTGGTGATACAGGGAGTGCCGCAATTGAGAGTGTCCGTAGATCACAGTGGGTGGACATCATTGTGTTGTTTCCCAAAGGGCGCTGCAATGTTGTTCAAGAACTGCAAATGACGACTGTCAGGGACCAAAATGTGCATGTGGTTAGAACTGAGGGAACGTCAGATGATCTGGATGTACCAATCAAAAACTGCTTCTCTGATCACGTCTATGCAGAATCCAATCATCTCTGCTCAATTAACTCCATTAACTGGGCTCGTATCATGGCCCAAATTGTGCACTTCTTTTACGCTTATTTTCAGACCTGTGAAGAAATTGGTGAAACTGTGACATTTGTGATACCCACCGGAGCGTTAGGACACTGTGCAGCTGGGTCAGTTGCAAACAAAATGGGTCTTCCAGTAAAACTGGTCTGTGCAGTCAATGAAAATGATATCGTCCATCGTGCTGTATCAACTGGGGATTTCACCATGTCAGAAAAAGTTATGCAAACATGGTCCTCTGCCATGGACATTCAGGTTCCTTACAATATGGAGCGCCTCTTGCTTCTTTTCTCTGACATGAACCACGCCCTTGTTGACTCGCTGATGCAAGAATTTGAACAGAAACACACTTTGAAGATCCCTCAAGACATACAACTGAAGATGCGTCAAGTCATTTCGTCTGCTTCTGTGTCACGTGACCAAACACTGCAAACTATGAAGGAGTGTTGGGATGAGTACCAGTACCTTCTCTGTCCACACACCGCTGTCGGCGTTTCCGTGATCTGGGACCAAAGGCGTTGCAACAATATCAAGACGCCCACAGTTTGCATTGCCACCGCCAGTCCAGCCAAGTTCCCTGAGGCAGTGAAGGCTGCTGGGATAGAAATGCCGCTGACTCCACAGCTGGCTCAACTTTTAACAAGTCCGACTCGTTGTAGTGACATGAAGAAGGGAGAAGACTGGGACCTCATTCTGCGTACAATGATAAGTGACATTTCGCGGAAGCGTCTTAGTAATTAAACTTGACCGACTTCATACAAATGGATTTCTAGCTTCTAAAGAAACTGGTACTGCGTCAGTGGGAAAGTAAAACGAAAATTTGGTTTTATCAAACGAGTTAATATAAAGGGCTAACGCTCGAAACGTCAGCTTTCAAATCTTTCACGGTGGTAATTCAACCTTTATCGACTCGTTTGATAAAATCCAATTTGTTTTGATTTTATACAAGTCCAACTGCACGGGCCAATCAGGATGATAAGCAAGGCAATAACTTAAGCTGCGTACGTCAACGTGATGGAGCCTGCTTTCATCTCCAAGAGTGAAACACGAGAATTTAATTCACCTCTGATTGCCTGGCATTGTGGCACGAGAATCTTGTTCACCTCTGATTGGCTGGTAATGTGGTAAACGCCTCCAAACCCGTTGCGCGTATCCAGGAGTCGTACTCGCAGTTCCAGGCATCGACCCGCGGGACTTAGCCGACAAAACATAATGTGGGATATTTTAACTCGTAATCATGCAAGCATGCAAATGCCTATCTTGAAATTTTAATTGAGGTCATTAAGGAGTACGTGTCAGTAAACAGAGGTCGGAAAGTTCTAGAGCCGTTTATAGAGCAGTTTATGAGTGGATAAAGTTGTTTTAAGATAAGAACAGTAAACCTTTCTTAGTGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RFE6	Threonine synthase-like 2 OS=Pongo abelii OX=9601 GN=THNSL2 PE=2 SV=1
Q86YJ6	Threonine synthase-like 2 OS=Homo sapiens OX=9606 GN=THNSL2 PE=1 SV=3
Q5M7T9	Threonine synthase-like 2 OS=Rattus norvegicus OX=10116 GN=Thnsl2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14821 all species →	Thr_synth_N	Threonine synthase N terminus	Domain	Interproscan
PF00291 all species →	PALP	Pyridoxal-phosphate dependent enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036052 all species →	Homologous_superfamily	Tryptophan synthase beta chain-like, PALP domain superfamily	Interproscan
IPR029144 all species →	Domain	Threonine synthase, N-terminal	Interproscan
IPR001926 all species →	Domain	Tryptophan synthase beta chain-like, PALP domain	Interproscan
IPR004450 all species →	Family	Threonine synthase-like	Interproscan
IPR051166 all species →	Family	Threonine Synthase	Interproscan
IPR037158 all species →	Homologous_superfamily	Threonine synthase, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42690 all species →	THREONINE SYNTHASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009071 all species →	Biological Process	serine family amino acid catabolic process	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0046360 all species →	Biological Process	2-oxobutyrate biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06037	THNSL2; O-phospho-L-threonine phospho-lyase	EC:4.2.3.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g23232.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.