Gene detail

Detailed information of g23337.t1 in Acropora digitifera

Genomic Location: chr11Alt:4306034...4309245
NR annotation: XP_044183815.1, protein toll-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g23337.t1

ATGCGCACTGACACGATTTTGATCGCAATTTTTGTCCTCTACGCCACGAAAACGTCCGGACAACAACCAAAGCGGTTCCTTGATTGCGAAAAGTCTCACTGCGTGTTGACAAAACCTTCAATGTCCATTTTCGAGGCAAAGAACCAGACTGTACCAATTCAAAGAATACTATGTCAAATAAAGATGAACCACACCGGAAGCAAATGCGTGATTGATATTCACGCAGTTTTAACCGCAGTGCAAACTTCGCAAGATACAATGTTGTACTTTATGGCGACGTGTTTGACTCCGGTGAATATTACCTTTCACAACTCTCAAAACGCCACCAAGAAAAACGTCATTTCTTACTTGGATTTACGAGGCCACTGCAGCATTTCAACGAGCGATATGTCAAAGTGGGGAAACGCAACGGATTTCCGAGTGTTTAATATGCTGGACAACGCAGTTCTTCTCAATGACAACAGTGTGCAAATGCGCAACTGGCCAATCCCAGGATTAGAAAACATTGGTTCTCTTATATTTTCCAAGGCCAAACACAAGAAAATTTCCGAAATATTCAAGAAATATTCTTGGCCCAGGATGGCAGAGATCTTTTTCGCTAACTTACAACTAACGTCGATTCCTAAAGAACTAAAGACTACTATGCCTTTGCTTCAATCACTTGAAGTTTCTAACAACAACTTAACAAAGCCACCCGATTTTCCCTGGTGTAACAACACGCTTGATCTTCCTCGCGGACTCAGCAGAAAGCCGACTTTTAATGACCATTACGAAGTCGGCACGATCGTGTCCCCCAAGATCTATCGACGATTTTTCGACCTGTCCTTTAACATGATAGAAGATTTATCGGCACATGAGTTTCACGGACATCTGAACAAACTTAACCTCAAAGGAAACAGGTTGAAGTCGATTGGACGAGATTCTTTCCGCAGATTGAAAGGGGTTCAAATGATCGATCTAAGCCATAACAATTTACAACACTTACCATCGCAGCTGTTTCGTCAGCTCAAAGATTTGCTACAACTTAGGCTCAATTTTAACCAAATTTCAAACATTCCAAAGGCAATCTTTAAGAGTCAAAAGCAAATCAAAAGAATTGACTTAGATCACAACAAAGTAACCTTAATTCCCAAGGGCTTATTTAGTGAGCTTAACAAGATGGAAGTACTCCATTTAGAAAACAACCAAATCATCACAATTGACGAGGAAGCTTTCGCAATTGATTCAAGTTTACTACGTGAGATACACCTTCAAAATAACAAAATTACCCGTGTACCTCAATCGCTACTCTTGCTACGCCATGCAAGACACATTGATTTGTCTTTCAACCGTTTGACATTTCAAGATCTTGACAAGACGATAGCGGAATTGGACGTAAGCACGTTTGCTTACCAACACCAAGAAACTGCAAGCTCACCTCAGTTCAGACTTCCAGAAAGCGTAAATCAGATGAACTTTGCACACAATCATTTCACCACCATCGACATCGCAGGAATGAGCCAATCCAAGCGAAACATGTTCGAACTCTTTCTGAGGGTTTACGAAATCGACATGACGGGGAATCCCCTTTTGTGCGATGGCGAACTCCTGGGTTTTGTTCGCTGGCTGAGGCACTGGATGCAAAATAACACAGGTTTGCGAGTTGTTAGGCCAAAGCAGTTTTCAACCTGGAAGTGCGCTGCTCCGGTGGAAATCAAAGACAAACCTATCTTGTCGGTGGCTGAGAATCAATTCATATCTAACAGAAACCTAAGCGACTGTCCAAAAGAATGCACGTGCCACGTTCGTTCCCTGCACGGAACCGTCATCGTTGACTGCAAAAAAAAGGACCTCCTCACAATGCCTCGCTCAGTTCCAGACGGTCAAACTGAACTGTTCTTACAAAGCAACAAGATCGAGGAGATTCCAAGCTATAGTTACTTAGAAAATGTCACGGCACTGTATTTGAGTCACAACAACATTGAACGACTGAACGAAAAGACAATCGACAGGCTGAAGCGAATTGAGATATTGTTCATCGACTCGAACAAACTGACTACATTACCACGAAACATTGAAAATGTAAGCTTCATCAAGATTTCCCTTCAACACAATTTCTTTCGATGCGACTGCAAAACAAAATGGATAAAACACTGGTTATTGCGACAAGAAGCTCACATCGACAACATTGAAAATATCCTGTGCCACTCCGACCACGTGAAAGGTAAAGCCATCTCTCGTCTACCAGATGAAGAGTTCGTTTGCCCCGCACCAGGCAAAAGCGGGCACCAAGCCGAGTCACCTGCTTTTAAAATAACCGCCTACACTCTTGGTGGCTTGCTTCTTGTGTTCTTGGTCGCTTTTGCAGTTGGGTACAAATTTCGCGGTGAAGTTAAAGTCTTTATGTACACTCATTTCAATTGGCACCCATTTGATCGAATCAACGATTTGGACCCAAACAAGATTTACGACGCCTTCATCTCGTTCAGCGGTATCGACTATGAGTGGATCTCCAATACGCTGTGTGCAAGACTAGAAAATCACGACCCACCTTACAAACTCTGCCTCCATCACCGTGATTTCCTAGTGGGTGCACCCATACAGCAAAACATCTTCAACGGCATAGAGAAGAGCAAACGAATGATTATGATACTTTCCAAAAATTTCGTCAAAAGCGAGTGGTGTTTGCTTGAATTTCGTGCCGCACACCAGAAAGTTCTGGAAGATCGAATCAATTACTTGATAATCATCCTGTTCGATGACGTCGACATGGCAGAAGTCGATGACGAAATAAAACTGTACATGCGCACAAACACCTATCTCAGCGTAAAGAACAAGTGGTTTTGGGAAAAGCTCTTTTACGCCCTGCCACAGAATTCAAAGAGAGAAACCGAGGCGAAGGATTGTCACCGAAGCGCTCACGTAAATTCAACGGCTGACGGAGACAACAATCTGTCGAGTGAAAGAGCACAAGTATGA

Transcript

chr11Alt.g23337.t1

AAGAACGGTGAAATTAAACCCCAGTTGAAGAAAGACAAAAGCAATCAACAATTGTTACAGTTGAACGCGTAAGTTACTTTCATTCGATATTCGTTCGCCAGTGAAAATGCGCACTGACACGATTTTGATCGCAATTTTTGTCCTCTACGCCACGAAAACGTCCGGACAACAACCAAAGCGGTTCCTTGATTGCGAAAAGTCTCACTGCGTGTTGACAAAACCTTCAATGTCCATTTTCGAGGCAAAGAACCAGACTGTACCAATTCAAAGAATACTATGTCAAATAAAGATGAACCACACCGGAAGCAAATGCGTGATTGATATTCACGCAGTTTTAACCGCAGTGCAAACTTCGCAAGATACAATGTTGTACTTTATGGCGACGTGTTTGACTCCGGTGAATATTACCTTTCACAACTCTCAAAACGCCACCAAGAAAAACGTCATTTCTTACTTGGATTTACGAGGCCACTGCAGCATTTCAACGAGCGATATGTCAAAGTGGGGAAACGCAACGGATTTCCGAGTGTTTAATATGCTGGACAACGCAGTTCTTCTCAATGACAACAGTGTGCAAATGCGCAACTGGCCAATCCCAGGATTAGAAAACATTGGTTCTCTTATATTTTCCAAGGCCAAACACAAGAAAATTTCCGAAATATTCAAGAAATATTCTTGGCCCAGGATGGCAGAGATCTTTTTCGCTAACTTACAACTAACGTCGATTCCTAAAGAACTAAAGACTACTATGCCTTTGCTTCAATCACTTGAAGTTTCTAACAACAACTTAACAAAGCCACCCGATTTTCCCTGGTGTAACAACACGCTTGATCTTCCTCGCGGACTCAGCAGAAAGCCGACTTTTAATGACCATTACGAAGTCGGCACGATCGTGTCCCCCAAGATCTATCGACGATTTTTCGACCTGTCCTTTAACATGATAGAAGATTTATCGGCACATGAGTTTCACGGACATCTGAACAAACTTAACCTCAAAGGAAACAGGTTGAAGTCGATTGGACGAGATTCTTTCCGCAGATTGAAAGGGGTTCAAATGATCGATCTAAGCCATAACAATTTACAACACTTACCATCGCAGCTGTTTCGTCAGCTCAAAGATTTGCTACAACTTAGGCTCAATTTTAACCAAATTTCAAACATTCCAAAGGCAATCTTTAAGAGTCAAAAGCAAATCAAAAGAATTGACTTAGATCACAACAAAGTAACCTTAATTCCCAAGGGCTTATTTAGTGAGCTTAACAAGATGGAAGTACTCCATTTAGAAAACAACCAAATCATCACAATTGACGAGGAAGCTTTCGCAATTGATTCAAGTTTACTACGTGAGATACACCTTCAAAATAACAAAATTACCCGTGTACCTCAATCGCTACTCTTGCTACGCCATGCAAGACACATTGATTTGTCTTTCAACCGTTTGACATTTCAAGATCTTGACAAGACGATAGCGGAATTGGACGTAAGCACGTTTGCTTACCAACACCAAGAAACTGCAAGCTCACCTCAGTTCAGACTTCCAGAAAGCGTAAATCAGATGAACTTTGCACACAATCATTTCACCACCATCGACATCGCAGGAATGAGCCAATCCAAGCGAAACATGTTCGAACTCTTTCTGAGGGTTTACGAAATCGACATGACGGGGAATCCCCTTTTGTGCGATGGCGAACTCCTGGGTTTTGTTCGCTGGCTGAGGCACTGGATGCAAAATAACACAGGTTTGCGAGTTGTTAGGCCAAAGCAGTTTTCAACCTGGAAGTGCGCTGCTCCGGTGGAAATCAAAGACAAACCTATCTTGTCGGTGGCTGAGAATCAATTCATATCTAACAGAAACCTAAGCGACTGTCCAAAAGAATGCACGTGCCACGTTCGTTCCCTGCACGGAACCGTCATCGTTGACTGCAAAAAAAAGGACCTCCTCACAATGCCTCGCTCAGTTCCAGACGGTCAAACTGAACTGTTCTTACAAAGCAACAAGATCGAGGAGATTCCAAGCTATAGTTACTTAGAAAATGTCACGGCACTGTATTTGAGTCACAACAACATTGAACGACTGAACGAAAAGACAATCGACAGGCTGAAGCGAATTGAGATATTGTTCATCGACTCGAACAAACTGACTACATTACCACGAAACATTGAAAATGTAAGCTTCATCAAGATTTCCCTTCAACACAATTTCTTTCGATGCGACTGCAAAACAAAATGGATAAAACACTGGTTATTGCGACAAGAAGCTCACATCGACAACATTGAAAATATCCTGTGCCACTCCGACCACGTGAAAGGTAAAGCCATCTCTCGTCTACCAGATGAAGAGTTCGTTTGCCCCGCACCAGGCAAAAGCGGGCACCAAGCCGAGTCACCTGCTTTTAAAATAACCGCCTACACTCTTGGTGGCTTGCTTCTTGTGTTCTTGGTCGCTTTTGCAGTTGGGTACAAATTTCGCGGTGAAGTTAAAGTCTTTATGTACACTCATTTCAATTGGCACCCATTTGATCGAATCAACGATTTGGACCCAAACAAGATTTACGACGCCTTCATCTCGTTCAGCGGTATCGACTATGAGTGGATCTCCAATACGCTGTGTGCAAGACTAGAAAATCACGACCCACCTTACAAACTCTGCCTCCATCACCGTGATTTCCTAGTGGGTGCACCCATACAGCAAAACATCTTCAACGGCATAGAGAAGAGCAAACGAATGATTATGATACTTTCCAAAAATTTCGTCAAAAGCGAGTGGTGTTTGCTTGAATTTCGTGCCGCACACCAGAAAGTTCTGGAAGATCGAATCAATTACTTGATAATCATCCTGTTCGATGACGTCGACATGGCAGAAGTCGATGACGAAATAAAACTGTACATGCGCACAAACACCTATCTCAGCGTAAAGAACAAGTGGTTTTGGGAAAAGCTCTTTTACGCCCTGCCACAGAATTCAAAGAGAGAAACCGAGGCGAAGGATTGTCACCGAAGCGCTCACGTAAATTCAACGGCTGACGGAGACAACAATCTGTCGAGTGAAAGAGCACAAGTATGAACTACTCTCACAATGAAGCCCGCCAACTGTTAATCCTTTTCGCAAAAGAAGATTTCGAACAATTAACTGCACGTTCAAAGGTGCGATATTCTGAACTCGTTGGCGGGCTTCTCCGTCTCAACTCTGACAATCAAGTGCGACTTTTTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P08953	Protein toll OS=Drosophila melanogaster OX=7227 GN=Tl PE=1 SV=1
Q9V477	Toll-like receptor Tollo OS=Drosophila melanogaster OX=7227 GN=Tollo PE=1 SV=1
Q95M53	Toll-like receptor 2 OS=Macaca fascicularis OX=9541 GN=TLR2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01582 all species →	TIR	TIR domain	Family	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR000483 all species →	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR017241 all species →	Family	Toll-like receptor	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR000372 all species →	Domain	Leucine-rich repeat N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24365 all species →	TOLL-LIKE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0002224 all species →	Biological Process	toll-like receptor signaling pathway	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006954 all species →	Biological Process	inflammatory response	Interproscan
GO:0006955 all species →	Biological Process	immune response	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18809	TL; protein toll	-	Toll and Imd signaling pathway	ko04624	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.