Gene detail

Detailed information of g23374.t1 in Acropora digitifera

Genomic Location: chr11Alt:4687660...4704633
NR annotation: XP_044180871.1, probable glycoprotein hormone G-protein coupled receptor isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g23374.t1

ATGTTTGGTTCGGCCCTGATCGCTCTCTTAGTCGTCGTGCACACTCGGGGATCCACGTGTCCGAATAAATGCCGTTGTGTTGCTTCACAGAACGAGACTAACGTGGAACTCATATGCAGCGCCCTGACATCTTTCCCAAAGTTGGACGATTTGCCAATCCATACATTCTCTTTGCATATAACGGAATCTACTATCGCTCACATCGCAGCAGGAATACTGAATGAACGGAAGAACATTTCAGTAATAAAGTTGAGCAATAACCAAATAAAAAGTGTGGACGATGGGGCATTTGATGGCCTTGTTAATCTATATCAAATTAAATTAGATCATAACTCGTTGGAAAAGTTTCCCGTTTTCAAGACCAAATCAGCTCTGAGAGAATTATTCTTAAGCAACAACAATATTGAGGAAATTTCGCAAACATCTCTAAAAAATTTACCAGAGTTGATTGAATTGAGATTAGACAGAAACCGTATTACAAAGATTCCAGCCAACGCGTTTAGCTACAATAAGAAACTGTCAAGTCTAAGCTTAAAATACTCTTGGTTATCAAAACTCGACGAGAACGCGTTTACTGGGTCTTACCTGGAAAAATTATATTTGCAAGGAACGAGCATCAAATCATTGCCATCAGCTGGTCTTCAAAGGCTCAAGATTCTTAACCTCGAATTTGTTAAAGAATTTTGGTCCATTCCTCCAGGGCTGACATCCATCCGCGAGGTACATGTCAGCAAATACAATTCGTTTCTTTGCTGTGCTTTTCATCTGGGGACATACCAACGCGACCCTGGCAGGCAGGTGGAAAAGAAATCAAGACCTACGTCGTCTTCTGTTTCAACGAAGGTTACAGAGAATCCTATAAGTGTTTCCAGCAGATCCCCCACTGCTGCGTCTGTCACCATGACTACTGTTACCATGACTACGAACAATTCATTCCATGACAACAATGTGAACACAACAACAACAACAACAGCTGGAGCAACGACCACCGAGTGCCCGATGTGTGGCTGGGGCAAGAGAAAGCGGAAACGCCGAGACTTACCTCAGGGGCCAAGCACAGTCGCTGGAACAGTCCGTGGTAGTTCTGCAAACATTACCAAAGGAGGGATATCTTCTTTCCCCACCGGAGCCACCTCAGGGTCTAGCAGTGGAGGAAGCGGAGGTTTTCTACCCGGAACTGCACATTCCCCGTGGGGAACGAACTCTGGTTTTAATGGCGGAGGTAGTTTGGGAGGTGGAGGAGGAGGATTCGAACCAGGGACGTTCGTACCCCCAGGGGGGTCTAGCGGTGGAGGATTTATCCCCGATAGGGGTGGCTTTTTACCCGTAACAATTACTGTTCCGGATACGATTACCCATCATCCTTCACCAAATGCAAGCGTTGCCCTCGTGAAAGAACCAGCACCTGATGAAATCGTGTGTTTACCAGAACGAGACGCCTACCACCCGTGTGAAGACATAATGGGGGCGAAATGGCTGACAATCGTTTCACTTCTTGTGGGAGTCGTTGCTTTAATATCAAACCTTACCGTGGCGTTTGTCCTGATTGCTAGCGAACGTCGGTTAAATGTTCACCGATTTCTGATGAGTAACCTCGCTTTTGCAGACTTTTGTCTCGGTCTTTATATTTTTACGCTTGTCTGTGTCTCGTTAAATACTTCAGGAGAGTATTACAACAGTGTGAGGACTTGGCAATATGGAGCAAGTTGCCAAATCACTGGTTTTCTCGCAGTCTTCTCAACAGAGCTGTCAGTGTTCACGTTAACACTCATTACCATTGAACGATTTTTCGCAATTGTGTATCTCATGGAGATGAATTACCGACTCTCGCTTCGTAAAGCGGTGAAAGTAATGGTAGTTGGTTGGCTGTTCGCTTTCCTGGTGGCTCTTTTACCACTATTGGGCGTCAACGATTACAGAAGTGTCGCTATTTGCTTGCCGTTTGACTCGGACAGTAGAAATGCCTCAGCATATATAGCCATTGTTTTGGTGCTAAATTTTGGCACCTTCTTGGTCGTCGCTGGTTTGTACGCGAAAATGTTCCAGGTTGTGGTGGGACCTGGGCCGGTTGAGGGAGCACGACAGCGAAATGACGCCAAAGTGGCAAAGCGCATGGCTCTGTTAGTTTTTACAGACTTTGTTTGTTGGGCTCCGATTGCTTTTTTTGGTTTGCTAGCAGCTTTTGGAAAACCTTTGATCGGAGTTGAGGAATCAAAGTTTCTTCTGGTATTTTTCTTTCCGCTTAACAGCCTTTGCAACCCATTCTTGTATGCATTTTTTACCAAAGAATTCAAGCGCGAATTCTTCTCCCTCCTAAGTCGATTTGGTTTCTGTCACACTCGAGCCATGCGTTACAAAGGCACACTCTCTTCCCTAGTTTATTCTCGGACTCGTACTAAGCGATCAACGATAGGCGAAGATGACTCGAGGACCAAACGAATATCTCAGATTTCAGCTACTTCTGCAACCACGGGAAACGGGTCCACGAAAGAGAATTGTGACGAGAATTATAACGGTGGCGTATTTGAGTACATCTCAATGAAGGGGGCTAATAGCCAGGCCTTCGATGACACGTCACCTCATAAGCAAGGAAACGATGACGTATTTTTCGACTTGACAACAAAAGCAGACACCACGCGCTCAGAATCACCTGGCAATTCTGATGAATGTAAACCACAGCTCATGCTGGCTCCGAGCGTGGGCAGTTTAGAAGAGGTTGAGAGACAAACAGTGGAAAAAAAATTGAAGAAGCTATCCGTGTGCTTTCGGGATGAACCGCAAGTAGCAGGACGGAAATAA

Transcript

chr11Alt.g23374.t1

ATGCAGACTATTTTAACGGATTTTTTTTATCATCTAAGAGAATCTGACTGCAAATTGGCTTTAAACTGCCACACCGCAGCAAGAGTGACTATTTTCGTCGACCAGCTACTATGTTTGGTTCGGCCCTGATCGCTCTCTTAGTCGTCGTGCACACTCGGGGATCCACGTGTCCGAATAAATGCCGTTGTGTTGCTTCACAGAACGAGACTAACGTGGAACTCATATGCAGCGCCCTGACATCTTTCCCAAAGTTGGACGATTTGCCAATCCATACATTCTCTTTGCATATAACGGAATCTACTATCGCTCACATCGCAGCAGGAATACTGAATGAACGGAAGAACATTTCAGTAATAAAGTTGAGCAATAACCAAATAAAAAGTGTGGACGATGGGGCATTTGATGGCCTTGTTAATCTATATCAAATTAAATTAGATCATAACTCGTTGGAAAAGTTTCCCGTTTTCAAGACCAAATCAGCTCTGAGAGAATTATTCTTAAGCAACAACAATATTGAGGAAATTTCGCAAACATCTCTAAAAAATTTACCAGAGTTGATTGAATTGAGATTAGACAGAAACCGTATTACAAAGATTCCAGCCAACGCGTTTAGCTACAATAAGAAACTGTCAAGTCTAAGCTTAAAATACTCTTGGTTATCAAAACTCGACGAGAACGCGTTTACTGGGTCTTACCTGGAAAAATTATATTTGCAAGGAACGAGCATCAAATCATTGCCATCAGCTGGTCTTCAAAGGCTCAAGATTCTTAACCTCGAATTTGTTAAAGAATTTTGGTCCATTCCTCCAGGGCTGACATCCATCCGCGAGGTACATGTCAGCAAATACAATTCGTTTCTTTGCTGTGCTTTTCATCTGGGGACATACCAACGCGACCCTGGCAGGCAGGTGGAAAAGAAATCAAGACCTACGTCGTCTTCTGTTTCAACGAAGGTTACAGAGAATCCTATAAGTGTTTCCAGCAGATCCCCCACTGCTGCGTCTGTCACCATGACTACTGTTACCATGACTACGAACAATTCATTCCATGACAACAATGTGAACACAACAACAACAACAACAGCTGGAGCAACGACCACCGAGTGCCCGATGTGTGGCTGGGGCAAGAGAAAGCGGAAACGCCGAGACTTACCTCAGGGGCCAAGCACAGTCGCTGGAACAGTCCGTGGTAGTTCTGCAAACATTACCAAAGGAGGGATATCTTCTTTCCCCACCGGAGCCACCTCAGGGTCTAGCAGTGGAGGAAGCGGAGGTTTTCTACCCGGAACTGCACATTCCCCGTGGGGAACGAACTCTGGTTTTAATGGCGGAGGTAGTTTGGGAGGTGGAGGAGGAGGATTCGAACCAGGGACGTTCGTACCCCCAGGGGGGTCTAGCGGTGGAGGATTTATCCCCGATAGGGGTGGCTTTTTACCCGTAACAATTACTGTTCCGGATACGATTACCCATCATCCTTCACCAAATGCAAGCGTTGCCCTCGTGAAAGAACCAGCACCTGATGAAATCGTGTGTTTACCAGAACGAGACGCCTACCACCCGTGTGAAGACATAATGGGGGCGAAATGGCTGACAATCGTTTCACTTCTTGTGGGAGTCGTTGCTTTAATATCAAACCTTACCGTGGCGTTTGTCCTGATTGCTAGCGAACGTCGGTTAAATGTTCACCGATTTCTGATGAGTAACCTCGCTTTTGCAGACTTTTGTCTCGGTCTTTATATTTTTACGCTTGTCTGTGTCTCGTTAAATACTTCAGGAGAGTATTACAACAGTGTGAGGACTTGGCAATATGGAGCAAGTTGCCAAATCACTGGTTTTCTCGCAGTCTTCTCAACAGAGCTGTCAGTGTTCACGTTAACACTCATTACCATTGAACGATTTTTCGCAATTGTGTATCTCATGGAGATGAATTACCGACTCTCGCTTCGTAAAGCGGTGAAAGTAATGGTAGTTGGTTGGCTGTTCGCTTTCCTGGTGGCTCTTTTACCACTATTGGGCGTCAACGATTACAGAAGTGTCGCTATTTGCTTGCCGTTTGACTCGGACAGTAGAAATGCCTCAGCATATATAGCCATTGTTTTGGTGCTAAATTTTGGCACCTTCTTGGTCGTCGCTGGTTTGTACGCGAAAATGTTCCAGGTTGTGGTGGGACCTGGGCCGGTTGAGGGAGCACGACAGCGAAATGACGCCAAAGTGGCAAAGCGCATGGCTCTGTTAGTTTTTACAGACTTTGTTTGTTGGGCTCCGATTGCTTTTTTTGGTTTGCTAGCAGCTTTTGGAAAACCTTTGATCGGAGTTGAGGAATCAAAGTTTCTTCTGGTATTTTTCTTTCCGCTTAACAGCCTTTGCAACCCATTCTTGTATGCATTTTTTACCAAAGAATTCAAGCGCGAATTCTTCTCCCTCCTAAGTCGATTTGGTTTCTGTCACACTCGAGCCATGCGTTACAAAGGCACACTCTCTTCCCTAGTTTATTCTCGGACTCGTACTAAGCGATCAACGATAGGCGAAGATGACTCGAGGACCAAACGAATATCTCAGATTTCAGCTACTTCTGCAACCACGGGAAACGGGTCCACGAAAGAGAATTGTGACGAGAATTATAACGGTGGCGTATTTGAGTACATCTCAATGAAGGGGGCTAATAGCCAGGCCTTCGATGACACGTCACCTCATAAGCAAGGAAACGATGACGTATTTTTCGACTTGACAACAAAAGCAGACACCACGCGCTCAGAATCACCTGGCAATTCTGATGAATGTAAACCACAGCTCATGCTGGCTCCGAGCGTGGGCAGTTTAGAAGAGGTTGAGAGACAAACAGTGGAAAAAAAATTGAAGAAGCTATCCGTGTGCTTTCGGGATGAACCGCAAGTAGCAGGACGGAAATAAGAAATAAATAACAAGCGCATCTCGACAGAGATCAACAAAATGAACTTTATGACAACACTGCTTCGAGCCTTTACGAATGAAATTATGAAATGTAGAATTTGAGGGTGTAGGAACTGCATGGGGAATAAAATCTGCCTTCGCCGGCAATCGAATTAAAAGAAAGACTTCACTGAGTTATCGGTGAAGGTACAAAATTGATTCAGAAAAACGTACTCTTAATGAACAGAAAACAGGACGCGTTTGTCGTGTTTTAGATCATGCAAAGCTTTATCAAACAACTACTATTAATTCAATAAAGATGTACAGTAAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35409	Probable glycoprotein hormone G-protein coupled receptor OS=Anthopleura elegantissima OX=6110 PE=2 SV=1
Q28005	Lutropin-choriogonadotropic hormone receptor OS=Bos taurus OX=9913 GN=LHCGR PE=2 SV=1
P16473	Thyrotropin receptor OS=Homo sapiens OX=9606 GN=TSHR PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR002131 all species →	Family	Glycoprotein hormone receptor family	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24372 all species →	GLYCOPROTEIN HORMONE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016500 all species →	Molecular Function	protein-hormone receptor activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007189 all species →	Biological Process	adenylate cyclase-activating G protein-coupled receptor signaling pathway	Interproscan
GO:0007190 all species →	Biological Process	activation of adenylate cyclase activity	Interproscan
GO:0008528 all species →	Molecular Function	G protein-coupled peptide receptor activity	Interproscan
GO:0009755 all species →	Biological Process	hormone-mediated signaling pathway	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04249	TSHR; thyrotropin receptor	-	G protein-coupled receptors	ko04030	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.