Gene detail

Detailed information of g234.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCH9704796.1, transferase hexapeptide repeat family protein [Pseudomonadota bacterium]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
B5F748	Carnitine operon protein CaiE OS=Salmonella agona (strain SL483) OX=454166 GN=caiE PE=3 SV=1
Q8GB16	Carnitine operon protein CaiE OS=Proteus sp. (strain LE138) OX=217617 GN=caiE PE=3 SV=1
B5FHG3	Carnitine operon protein CaiE OS=Salmonella dublin (strain CT_02021853) OX=439851 GN=caiE PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00132	Hexapep	Bacterial transferase hexapeptide (six repeats)	Repeat	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR052160	Family	Gypsy Retrotransposon Integrase-like	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR050484	Family	Transferase Hexapeptide/Carbonic Anhydrase	Interproscan
IPR011004	Homologous_superfamily	Trimeric LpxA-like superfamily	Interproscan
IPR001451	Repeat	Hexapeptide repeat	Interproscan
IPR052035	Family	Zinc finger BED domain-containing	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR036982	Homologous_superfamily	Deoxyhypusine synthase superfamily	Interproscan
IPR029035	Homologous_superfamily	DHS-like NAD/FAD-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47266	ENDONUCLEASE-RELATED	Interproscan
PTHR45048	-	Interproscan
PTHR13061	DYNACTIN SUBUNIT P25	Interproscan
PTHR46481	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008612	Biological Process	peptidyl-lysine modification to peptidyl-hypusine	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24757	WDR88; WD repeat-containing protein 88	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala