Gene detail

Detailed information of g2360.t1 in Acropora digitifera

Genomic Location: chr1Alt:37143380...37147757
NR annotation: XP_029185707.2, homocysteine S-methyltransferase YbgG-like isoform X2 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O31463	Homocysteine S-methyltransferase YbgG OS=Bacillus subtilis (strain 168) OX=224308 GN=ybgG PE=4 SV=1
Q9M1W4	Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=HMT-2 PE=1 SV=1
P56707	Selenocysteine methyltransferase OS=Astragalus bisulcatus OX=20406 GN=SMTA PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02574 all species →	S-methyl_trans	Homocysteine S-methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036589 all species →	Homologous_superfamily	Homocysteine-binding domain superfamily	Interproscan
IPR003726 all species →	Domain	Homocysteine-binding domain	Interproscan
IPR017226 all species →	Family	Betaine-homocysteine S-methyltransferase, BHMT	Interproscan
IPR051486 all species →	Family	Homocysteine S-methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46015 all species →	ZGC:172121	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0009086 all species →	Biological Process	methionine biosynthetic process	Interproscan
GO:0008898 all species →	Molecular Function	S-adenosylmethionine-homocysteine S-methyltransferase activity	Interproscan
GO:0033528 all species →	Biological Process	S-methylmethionine cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00547	mmuM, BHMT2; homocysteine S-methyltransferase	EC:2.1.1.10	Cysteine and methionine metabolism	ko00270	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.