Gene detail

Detailed information of g23629.t1 in Montipora capitata

Genomic Location: Sc0002281:11154...14300
NR annotation: XP_020626442.1, probable ATP-dependent DNA helicase RecS isoform X1 [Orbicella faveolata]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g23629.t1

atgtcggaattgtcagcgcctgttctgagattgcaacatttcaaagatattttacccaaaacgtatttagatgcctggacgtcaggaaaaatctcttgccctcatattgactgctcgttaaataatgtcttactgtttcctgacgggttaaagaatcactatcgagctcaacattcgccagcttcgtgtggggatgaggaacagcaacaaggaaaaaattgcatgaggaaactcttggccgcagaaaccctaaacaacctcaccattctgtcccagaagaggaaagaacaagattatgcacaattgtatcagaccttcacaattgaatgcaatggtgaatgttttgatgtagttgctatacatgaaaaagaggcagcaaagttgtttggtctttacctgtggcacaaaggagacttacattggctggaggaaggcagtaaaccagtcttggttaaggtgcgaaacacaatggtgtcttcaatatttaacttgtggcgaagtaaacaaaagatttatgcagaagtcacattttacaagaagtttcacacctatgtgctaccaacccctgcacctcaagcccaaccaatccatgcctcaattatgcaagagattccaaatgctttgactgaggaagatgaaccactttatgttttgaagacaatttttggttatgagtcctttcgtgaaggccaactggaagctatccaagccatagttggtggcaaggactgtgtgatactgatgcccactggtggagggaaaagtttgatatttgcagttgcagccattgtaaagcaaggattgactgttgtgatagaacctcttaaatttttaatggaagaacaggttgctattttacgagaaaaaggcgtgtctgccttttacttcaactcttctctaacagatacagaaatggattttgtcattcatagtcttacaaggtttaggtcccagtacgtcatgttatttaccagtccagaatgcattttcagtgaaagactgaaaaaagtcttatccagttggaatgccattggaaaactgggcctaattgcagtagatgaagctcactgcattgattcctggggagttggattcagaccagattataccagacttggggaactaaaaagctacggaactgtcatagccgcatttactggaacagcaacacctcactctttacaagttcttattgacaccttgaaactgcaggaatgttctgtcatccaaacatcttttttgcgagataacttgtttattgaagtgttggacaaaaaagacaatgcaaaacaacaattggccacaatgatcctggaaaaattccagaacaattgtggaattgtctattgtgccagaaggcaggatgctgtggatgtggcacatgaacttaaaaagtatggtgttagcgtgacatatgttcatggtgccttgagcgacattgaccgcaaaaaaaatgaggaactgtggagtaatgacaacgctaaggtcatgtgtgctaccaagtgttttggaatgggaataaacaaaggaaatgtccgatttgttatacatctcacattcccagaatcccttgaagattattaccaggaaattggtcgggctgggagagatggctaccctgcaacatgtattaccctgtttaaatttgaaaaccggtcttttcatttgcataatataaaagagattgaagatgaaggaaacaaaaatcaaagatacaataaactgaatgaatcaacttatttcttctataattctacagagtgcaggcacgtgcagattctctcatattttggtgaaggtgcttcaaacccatgtgagaccacatgtgatgtttgtacaaatggaccactaagagatcatggcattcaaagtgataaaacagaactagctaaaattgtcattcactgtgtcatagaaatgcaaattgttgggaaagtaaatgtgactttgctctcccaagttttgatgggatctgtgtctgcagaaattttaaccagtggactggataaactaaatggctattgcaaggccaaggaactcttgcctgggagaaatggaaggaagttgttggtaaaatttatatactacctcattcttaaaggcttcttgaaagaaacaattagtggagcaagtaattgcaatgttgctttgactgtaggtgatgtaagcaacctgctttcaggttcagttaagatttattaa

Transcript

g23629.t1

ATGTCGGAATTGTCAGCGCCTGTTCTGAGATTGCAACATTTCAAAGATATTTTACCCAAAACGTATTTAGATGCCTGGACGTCAGGAAAAATCTCTTGCCCTCATATTGACTGCTCGTTAAATAATGTCTTACTGTTTCCTGACGGGTTAAAGAATCACTATCGAGCTCAACATTCGCCAGCTTCGTGTGGGGATGAGGAACAgcaacaaggaaaaaattgcatGAGGAAACTCTTGGCCGCAGAAACCCTAAACAACCTCACCATTCTGTCCCAGAAGAGGAAAGAACAAGATTATGCACAATTGTATCAGACCTTCACAATTGAATGCAATGGTGAATGTTTTGATGTAGTTGCTATACATGAAAAAGAGGCAGCAAAGTTGTTTGGTCTTTACCTGTGGCACAAAGGAGACTTACATTGGCTGGAGGAAGGCAGTAAACCAGTCTTGGTTAAGGTGCGAAACACAATGGTGTCTTCAATATTTAACTTGTGGCGAAGTAAACAAAAGATTTATGCAGAAGTCACATTTTACAAGAAGtTTCACACCTATGTGCTACCAACCCCTGCACCTCAAGCCCAACCAATCCATGCCTCAATTATGCAAGAGATTCCAAATGCTTTGACTGAGGAAGATGAACCACTTTATGTTTTGAAGACAATTTTTGGTTATGAGTCCTTTCGTGAAGGCCAACTGGAAGCTATCCAAGCCATAGTTGGTGGCAAGGACTGTGTGATACTGATGCCCACTGGTGGAGGGAAAAGTTTGATATTTGCAGTTGCAGCCATTGTAAAGCAAGGATTGACTGTTGTGATAGAACCTCTTAAATTTTTAATGGAAGAACAGGTTGCTATTTTACGAGAAAAAGGCGTGTCTGCCTTTTACTTCAACTCTTCTCTAACAGATACAGAAATGGATTTTGTCATTCATAGTCTTACAAGGTTTAGGTCCCAGTACGTCATGTTATTTACCAGTCCAGAATGCATTTTCAGTGAAAGACTGAAAAAAGTCTTATCCAGTTGGAATGCCATTGGAAAACTGGGCCTAATTGCAGTAGATGAAGCTCACTGCATTGATTCCTGGGGAGTTGGATTCAGACCAGATTATACCAGACTTGGGGAACTAAAAAGCTACGGAACTGTCATAGCCGCATTTACTGGAACAGCAACACCTCACTCTTTACAAGTTCTTATTGACACCTTGAAACTGCAGGAATGTTCTGTCATCCAAACATCTTTTTTGCGAGATAACTTGTTTATTGAAGTGTTggacaaaaaagacaatgcaaaaCAACAATTGGCCACAATGATCCTGGAAAAATTCCAGAACAATTGTGGAATTGTCTATTGTGCCAGAAGGCAGGATGCTGTGGATGTGGCACATGAACTTAAAAAGTATGGTGTTAGCGTGACATATGTTCATGGTGCCTTGAGCGACATTGACCGCAAAAAAAATGAGGAACTGTGGAGTAATGACAACGCTAAGGTCATGTGTGCTACCAAGTGTTTTGGAATGGGAATAAACAAAGGAAATGTCCGATTTGTTATACATCTCACATTCCCAGAATCCCTTGAAGATTATTACCAGGAAATTGGTCGGGCTGGGAGAGATGGCTACCCTGCAACATGTATTACCCTGTTTAAATTTGAAAACCGGTCTTTTCATTTGCATAATATAAAAGAGATTGAAgatgaaggaaacaaaaatcAAAGATACAATAAACTGAATGAATCAACTTATTTCTTCTATAATTCTACAGAGTGCAGGCACGTGCAGATTCTCTCATATTTTGGTGAAGGTGCTTCAAACCCATGTGAGACCACATGTGATGTTTGTACAAATGGACCACTAAGAGATCATGGCATTCAAAGTGATAAAACAGAACTAGCTAAAATTGTCATTCACTGTGTCATAGAAATGCAAATTGTTGGGAAAGTAAATGTGACTTTGCTCTCCCAAGTTTTGATGGGATCTGTGTCTGCAGAAATTTTAACCAGTGGACTGGATAAACTAAATGGCTATTGCAAGGCCAAGGAACTCTTGCCTGGGAGAAATGGAAGGAAGTTGTTGGTAAAATTTATATACTACCTCATTCTTAAAGGCTTCTTGAAAGAAACAATTAGTGGAGCAAGTAATTGCAATGTTGCTTTGACTGTAGGTGATGTAAGCAACCTGCTTTCAGGTTCAGTTAAGATTTATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q09811	ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rqh1 PE=1 SV=1
P35187	ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SGS1 PE=1 SV=1
O34748	ATP-dependent DNA helicase RecQ OS=Bacillus subtilis (strain 168) OX=224308 GN=recQ PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000285 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16124 all species →	RecQ_Zn_bind	RecQ zinc-binding	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF09382 all species →	RQC	RQC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032284 all species →	Domain	ATP-dependent DNA helicase RecQ, zinc-binding domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR004589 all species →	Family	DNA helicase, ATP-dependent, RecQ type	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR018982 all species →	Domain	RQC domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13710 all species →	DNA HELICASE RECQ FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0009378 all species →	Molecular Function	four-way junction helicase activity	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0043138 all species →	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10899	RECQL; ATP-dependent DNA helicase Q1	EC:5.6.2.4	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.