Gene detail

Detailed information of g237.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MCH9757741.1, 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase PaaG [Pseudomonadota bacterium]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P77467	1,2-epoxyphenylacetyl-CoA isomerase OS=Escherichia coli (strain K12) OX=83333 GN=paaG PE=1 SV=1
P24162	Probable enoyl-CoA hydratase OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) OX=272942 GN=fadB1 PE=3 SV=1
A4YI89	3-hydroxypropionyl-coenzyme A dehydratase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348 / JCM 9185 / NBRC 15509 / TH2) OX=399549 GN=Msed_2001 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000307 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000370 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001337 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002248 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003631 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004157 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0015599 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0022293 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00144 all species →	Beta-lactamase	Beta-lactamase	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF05380 all species →	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF04752 all species →	ChaC	ChaC-like protein	Family	Interproscan
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF00378 all species →	ECH_1	Enoyl-CoA hydratase/isomerase	Domain	Interproscan
PF14226 all species →	DIOX_N	non-haem dioxygenase in morphine synthesis N-terminal	Family	Interproscan
PF03171 all species →	2OG-FeII_Oxy	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012338 all species →	Homologous_superfamily	Beta-lactamase/transpeptidase-like	Interproscan
IPR001466 all species →	Domain	Beta-lactamase-related	Interproscan
IPR052794 all species →	Family	Mitochondrial Serine Protease LACTB	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR008042 all species →	Family	Retrotransposon, Pao	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR006840 all species →	Family	Glutathione-specific gamma-glutamylcyclotransferase	Interproscan
IPR050382 all species →	Family	Major Facilitator Superfamily Sodium/Anion Cotransporter	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR052116 all species →	Family	Centrosome and Cilium Assembly Protein	Interproscan
IPR001753 all species →	Family	Enoyl-CoA hydratase/isomerase	Interproscan
IPR014748 all species →	Homologous_superfamily	Enoyl-CoA hydratase, C-terminal	Interproscan
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR027443 all species →	Homologous_superfamily	Isopenicillin N synthase-like superfamily	Interproscan
IPR050231 all species →	Family	Iron/ascorbate-dependent oxidoreductase	Interproscan
IPR005123 all species →	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR026992 all species →	Domain	Non-haem dioxygenase N-terminal domain	Interproscan
IPR044861 all species →	Domain	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46520 all species →	SERINE BETA-LACTAMASE-LIKE PROTEIN LACTB, MITOCHONDRIAL	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan
PTHR12192 all species →	CATION TRANSPORT PROTEIN CHAC-RELATED	Interproscan
PTHR11662 all species →	SOLUTE CARRIER FAMILY 17	Interproscan
PTHR23170 all species →	NY-REN-58 ANTIGEN	Interproscan
PTHR43459 all species →	ENOYL-COA HYDRATASE	Interproscan
PTHR47990 all species →	2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0019216 all species →	Biological Process	regulation of lipid metabolic process	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003839 all species →	Molecular Function	gamma-glutamylcyclotransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006751 all species →	Biological Process	glutathione catabolic process	Interproscan
GO:0061928 all species →	Molecular Function	glutathione specific gamma-glutamylcyclotransferase activity	Interproscan
GO:0006820 all species →	Biological Process	monoatomic anion transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0051660 all species →	Biological Process	establishment of centrosome localization	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0097539 all species →	Cellular Component	ciliary transition fiber	Interproscan
GO:0016706 all species →	Molecular Function	2-oxoglutarate-dependent dioxygenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15866	paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	EC:5.3.3.18	Phenylalanine metabolism	ko00360	deepkoala
K16754	CEP83, CCDC41; centrosomal protein CEP83	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →