Genomic Location: Sc0002364:1622...13802
NR annotation: KAJ7380258.1, ATP-dependent helicase NAM7 [Desmophyllum pertusum]
Species abbreviation MCAPI · all data for this species · gene families
| CDS |
| g23761.t1 |
| Transcript |
| g23761.t1 |
| Protein |
| g23761.t1 |
| UniProt accession | Description |
|---|---|
| Q98TR3 | Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes OX=31033 GN=rent1 PE=3 SV=1 |
| F1RCY6 | Regulator of nonsense transcripts 1 OS=Danio rerio OX=7955 GN=upf1 PE=2 SV=1 |
| Q9EPU0 | Regulator of nonsense transcripts 1 OS=Mus musculus OX=10090 GN=Upf1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004555 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF09416 all species → | UPF1_Zn_bind | RNA helicase (UPF2 interacting domain) | Domain | Interproscan |
| PF18141 all species → | UPF1_1B_dom | RNA helicase UPF1, 1B domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR018999 all species → | Domain | RNA helicase UPF1, Cys/His rich zinc-binding domain | Interproscan |
| IPR040812 all species → | Domain | RNA helicase UPF1, 1B domain | Interproscan |
g23761.t1. This gene does have a gene model — the search simply returned no hit.| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000184 all species → | Biological Process | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0003724 all species → | Molecular Function | RNA helicase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
g23761.t1.
