Gene detail

Detailed information of g23830.t1 in Montipora capitata

Genomic Location: Sc0002414:11743...20611
NR annotation: XP_029195205.2, LOW QUALITY PROTEIN: uncharacterized protein LOC114960886 [Acropora millepora]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g23830.t1

atgcagcacatgttggtcctgttgagaattttgtggcatctgcaaagggggaaggtttggtctccaattgtatcagcacaaggaaaaccaggtcttccaagatggctgtcatttgattcggctaaaaaccaacttcatggagtggcacaatggcgtgacaaagggaaagttgacattgaaatccattcagtgaaaagaaatgataaagctgtttttacaatttttatccaagatttacataccgtgttgaacaatcaatccttgttctcaaatgaaaccaaagtgcccgatttcacagaaccaaagtgtgtcaatggattgcctgttgctctggcaaccgttttgtttgaccttaacatggagacattttctggatctgggagagaaaatctcatgagcaaattgtctgattttgtcaacgtcaacataaacaaccttcacgtggcagtgggcagaggacataacacagcattcggtttgaaggatgcaacagtggtcactgcaggacctggaaatgttgcagactcaaaacaacctggaattgcaatttcctggcaaatcggttgtggtgtcgatgtttcaggaatccaagttgcgtctttgttgaaatccagttccgagagaggatccttcaagcatgctctggatgcaccagttactggttggcatattgtgactggccatcccaaaagtcatcggcaaagagtacgcagacagataaacttgagcccaactcctatcgcaacacaaatgttaggaagtgtagttcatcaagtgatctatgtgactgccacccagacatacaccatgtccccacctcctccaacactcggaagtgtgactgtgacggtgtcggctgttgtgacgccaactgtctattccgtcaaccatgcacctgaagttcggaaaccccttggccccttaactgtgtatctaggaaaggcgctacgatacaccattcctgcagatacaatttgggaccaagaagatggctccactaggaatttaagactagaaatgaagacaggaaatggtgaggaactttcagcatcatcatggataaagtttaactcttcaaagcaagagatctatggcatgcctttggaggaaggctctagaagtcactcatttcttctcattgcaactgatagtggaggaaggtctcttcgtttttcattcactgtgcaagtttcagaagttcaaagtgtcacattcaatgacaaatttacaatagtcacgcactacaacaaattgttgatgaatgatgtcggcatccagttgaatctgatgagaaaaatttcccgttattatggaacaaaattgaaccatttacacttgctttcctacaagtactaccatggtgcccttttcttcacatttcagctagaatctccaggagcaaatgcagactgcaataaccagttcttgaggggcattaaagatggcattggaaacaatgaaaagttgaatcaaaactttgtggctgcccttcttccagagtttaagataatgtatggttactttgaagggataggatcgtgtaaggcacctaaaccaccattcaattatccacctcgagtacgcagtcctgttggcccgctgtatgttgtgtggggacaagcaatgcactactccattccgtttaacacattttatgatgaacaagactattatactcccaacatgaggattcaaatgagaacagggaataacgaggctctcccatcaacctcgtggattcagtttaattcctctcagcaagtgatttatggtgaaacaaatgaccaaacgttggttggacagcacatgtatcgcattgttgctatggacagtgaggggttagagacttttgttagttttaatgtcaccgtgcagcatgacacaggaaagtacaatcacgagtttggaatacaacttcggcgctctttctatcaagtcttggtagaaaatgctacagtcagggtgtctttgatcaaggcaattgccagctactatgggctagccctgaaacgagtacgctttgcaagatatgttcctggagcctctgtacatttcaggtttgattccattccatatgaagattgcaatagcctggaactaactcggttaatagatggtttctggatgcaccagcaaagggaagtgaatgacacatttgttgcacatcttaaacaccgcaagtttactgtaagagctgcctcttatcgtggtttgggaccttgtacaaaacttacacctgaggtaaaagatggtaaactaacggcgaagcgacgccaccgcctggaagttttcttgggacaagttttgaagtttcatgtcccgtttgaaacattttatgattggcttgacttttatacgccaaatctaaagctttacatcagaccacaaaaaagtggtcctcctgggtggattgtagttgacccttggcagaatgtccttgcattaccattaaataaaagatacgttggaaaaaacgagtttgacctggttgcaaaaaacagcagagaaaaggaaggagaaacggaactaacagtaactgtcttgacagatgccaacccttacaaccacgagttcacaattcgcttcaaacactttgcactattcaagaacaatgtgactatgggggttacattggtggagaggattgctgcatattatggtctccattacaaaaacattagagtgcctactgaaggcccagaggatgccttcacatttcgatttgatactgttccttttcgggaatgtaaccacagaaacctcacgaagctggtagatggattctggagtggaaaagctttgaatccaaaatttgaggatgcccttgagcctgatttccaaattatttctggctattataaacttcgtgaaccttgtgctcttaataccacacctccactggtaatgaaacccattgggaccctcacaataacacagggtcaacaaatgaagtatcacatccccttggacacatttcacgacaaggaagatggctacacgacaaacctgacgttgatggcatctatggacaacaaagatcttccttcttggattttcctgaactcttcaaatcaagatttaattattcttccaattgatagcagtgctgtgggaactcataaccttcacctgacagctgtggacagggggggattcgcagctactgacataattgaagtaaaggtgttgtcagactttaccatatataagaatgaatttcaatttgacattgtagatgcaagtgtcgttgtagagaatgttcaaacaaagatgcttttgatgcacaagcttgcagcttatttcggagtgcctcttgaagatgtccatatcagtggttttggacgcgattatccacctacctgtacatttcacctcaaatcccttaaagatcttaaatgtgatgactcaggcatatcagatgttattaagagctttataaaggaggacggaaagctgaacaaaaactttgtcaatacgatggagcctgagtttgaagtctcagctggtttacacaaaggccttggaccctgcaaacccccacctccagcccccaacaccccaccaaaactatacaaccacattgacagactggatgtattccagggacagggcttgcgatttcacattccatatgattccttttttgacaaggaagatggatacacgccagatctttccctgaaaatgaacaccatcgatggccatgagcttttgaacacttcctggattttgctcaattcttcccgtcaagagattcttggattgcctgctgatgttaatagaattggaatgcacgaggttctccttattgccagtgacaaggaaggagccagggcttatgatgcgttcgaagtaagggtgctggaagaagatactccctacaatcacaaatttaatattgttctagactatgacaatgccacctttttggggaaggttggaataagagttatgctcttagacaccatagctggctactttggtgtcaactttaccagcgtgcgtgtcgtcagctatgctcctggtgttctgttttccttttattttgattttattccatatgatgactgctcacattcattgctgaggaagttgatcgatgatttcgagcttgatggaggactgaatccagcctttgtagcggctcttcaaccaggttttagggtcagtgctggttcctatgagagagttggtccatgccaacctgttagtggaccagagattggtgcgaaggtgggtgatcgacctggagggatatggtggacctatgccatcattcctgccattgtactggcaattgttttgcttgtcatagggtgctgtttgttgatcatgatgggatgttgtcggaggaataaaatgtcaggagctgagaagatgacctacatatataagaaaaaaccagttgtactccaagaagagtacgagattaaggaaatgctactgaaacagcccctggccctgcccaatgaaaaacctccagttccccctgtctatcctcgcagccccgttatgggaggtgatagaactccactgctgaatacagaatccaaatcagtatcttaccgagctccagtgtatacgtctaatgggcaaatggcaggcagtgtcagtggaaatgctgggtttgtcccaaatggaggtggtggtgctgctggaggtggtgaattgggtgcagctggtggtggcggtgctgctgctggagggggtgccgcaggtgctagtttggctggaggaggtgcagctgtaggggttgcagctggaggcagtggtggttcaagttcttttggagggggaggtggtggcggtggtggtagtgcaggtgcaggaggaggatttggtgccagtggaggtggtggcatgagtgctggtggtggaggtggtgctggttctggtatggaatcagctggtgctggtgctggtgctggaagtggaacaggccaaggagggggcagtggtttaagtgtaagttacagtatggccacaggtggtggaagattcaagcagtcctcttacagctacagttacagcagcagtggtggcagtgtttcaagctcaggtcgcaagatggcttactccggctacaggctccctccagcctatgttccaccttaa

Transcript

g23830.t1

ATGCAGCACATGTTGGTCCTGTTGAGAATTTTGTGGCATCTGCAAAGGGGGAAGGTTTGGTCTCCAATTGTATCAGCACAAGGAAAACCAGGTCTTCCAAGATGGCTGTCATTTGATTCGGCTAAAAACCAACTTCATGGAGTGGCACAATGGCGTGACAAAGGGAAAGTTGACATTGAAATCCATTCAGTGAAAAGAAATGATAAAGctgtttttacaatttttatcCAAGATTTACATACCGTGTTGAACAATCAATCCTTGTTCTCAAATGAAACCAAAGTGCCCGATTTCACAGAACCAAAGTGTGTCAATGGATTGCCTGTTGCTCTGGCAACCGTTTTGTTTGACCTTAACATGGAGACATTTTCTGGATCTGGGAGAGAAAATCTCATGAGCAAATTGTCTGATTTTGTCAACGTCAACATAAACAACCTTCACGTGGCAGTGGGCAGAGGACATAACACAGCATTCGGTTTGAAGGATGCAACAGTGGTCACTGCAGGACCTGGAAATGTTGCAGACTCAAAACAACCTGGAATTGCAATTTCCTGGCAAATCGGTTGTGGTGTCGATGTTTCAGGAATCCAAGTTGCGTCTTTGTTGAAATCCAGTTCCGAGAGAGGATCCTTCAAGCATGCTCTGGATGCACCAGTTACTGGTTGGCATATTGTGACTGGCCATCCCAAAAGTCATCGGCAAAGAGTACGCAGACAGATAAACTTGAGCCCAACTCCTATCGCAACACAAATGTTAGGAAGTGTAGTTCATCAAGTGATCTATGTGACTGCCACCCAGACATACACCATGTCCCCACCTCCTCCAACACTCGGAAGTGTGACTGTGACGGTGTCGGCTGTTGTGACGCCAACTGTCTATTCCGTCAACCATGCACCTGAAGTTCGGAAACCCCTTGGCCCCTTAACTGTGTATCTAGGAAAGGCGCTACGATACACCATTCCTGCAGATACAATTTGGGACCAAGAAGATGGCTCCACTAGGAATTTAAGACTAGAAATGAAGACAGGAAATGGTGAGGAACTTTCAGCATCATCATGGATAAAGTTTAACTCTTCAAAGCAAGAGATCTATGGCATGCCTTTGGAGGAAGGCTCTAGAAGTCACTCATTTCTTCTCATTGCAACTGATAGTGGAGGAAGGTCTCTTCGTTTTTCATTCACTGTGCAAGTTTCAGAAGTTCAAAGTGTCACATTCAATGACAAATTTACAATAGTCACGCACTACAACAAATTGTTGATGAATGATGTCGGCATCCAGTTGAATCTGATGAGAAAAATTTCCCGTTATTATGGAACAAAATTGAACCATTTACACTTGCTTTCCTACAAGTACTACCATGGTGCCCTTTTCTTCACATTTCAGCTAGAATCTCCAGGAGCAAATGCAGACTGCAATAACCAGTTCTTGAGGGGCATTAAAGATGGCATTGGAAACAATGAAAAGTTGAATCAAAACTTTGTGGCTGCCCTTCTTCCAGAGTTTAAGATAATGTATGGTTACTTTGAAGGGATAGGATCGTGTAAGGCACCTAAACCACCATTCAATTATCCACCTCGAGTACGCAGTCCTGTTGGCCCGCTGTATGTTGTGTGGGGACAAGCAATGCACTACTCCATTCCGTTTAACACATTTTATGATGAACAAGACTATTATACTCCCAACATGAGGATTCAAATGAGAACAGGGAATAACGAGGCTCTCCCATCAACCTCGTGGATTCAGTTTAATTCCTCTCAGCAAGTGATTTATGGTGAAACAAATGACCAAACGTTGGTTGGACAGCACATGTATCGCATTGTTGCTATGGACAGTGAGGGGTTAGAGACTTTTGTTAGTTTTAATGTCACCGTGCAGCATGACACAGGAAAGTACAATCACGAGTTTGGAATACAACTTCGGCGCTCTTTCTATCAAGTCTTGGTAGAAAATGCTACAGTCAGGGTGTCTTTGATCAAGGCAATTGCCAGCTACTATGGGCTAGCCCTGAAACGAGTACGCTTTGCAAGATATGTTCCTGGAGCCTCTGTACATTTCAGGTTTGATTCCATTCCATATGAAGATTGCAATAGCCTGGAACTAACTCGGTTAATAGATGGTTTCTGGATGCACCAGCAAAGGGAAGTGAATGACACATTTGTTGCACATCTTAAACACCGCAAGTTTACTGTAAGAGCTGCCTCTTATCGTGGTTTGGGACCTTGTACAAAACTTACACCTGAGGTAAAAGATGGTAAACTAACGGCGAAGCGACGCCACCGCCTGGAAGTTTTCTTGGGACAAGTTTTGAAGTTTCATGTCCCGTTTGAAACATTTTATGATTGGCTTGACTTTTATACGCCAAATCTAAAGCTTTACATCAGACCACAAAAAAGTGGTCCTCCTGGGTGGATTGTAGTTGACCCTTGGCAGAATGTCCTTGCATTACCATTAAATAAAAGATACGTTGGAAAAAACGAGTTTGACCTGGTTGCAAAAAACAGCAGAGAAAAGGAAGGAGAAACGGAACTAACAGTAACTGTCTTGACAGATGCCAACCCTTACAACCACGAGTTCACAATTCGCTTCAAACACTTTGCACTATTCAAGAACAATGTGACTATGGGGGTTACATTGGTGGAGAGGATTGCTGCATATTATGGTCTCCATTACAAAAACATTAGAGTGCCTACTGAAGGCCCAGAGGATGCCTTCACATTTCGATTTGATACTGTTCCTTTTCGGGAATGTAACCACAGAAACCTCACGAAGCTGGTAGATGGATTCTGGAGTGGAAAAGCTTTGAATCCAAAATTTGAGGATGCCCTTGAGCCTGATTTCCAAATTATTTCTGGCTATTATAAACTTCGTGAACCTTGTGCTCTTAATACCACACCTCCACTGGTAATGAAACCCATTGGGACCCTCACAATAACACAGGGTCAACAAATGAAGTATCACATCCCCTTGGACACATTTCACGACAAGGAAGATGGCTACACGACAAACCTGACGTTGATGGCATCTATGGACAACAAAGATCTTCCTTCTTGGATTTTCCTGAACTCTTCAAATCAAGATTTAATTATTCTTCCAATTGATAGCAGTGCTGTGGGAACTCATAACCTTCACCTGACAGCTGTGGACAGGGGGGGATTCGCAGCTACTGACATAATTGAAGTAAAGGTGTTGTCAGACTTTACCATATATAAGAATGAATTTCAATTTGACATTGTAGATGCAAGTGTCGTTGTAGAGAATGTTCAAACAAAGATGCTTTTGATGCACAAGCTTGCAGCTTATTTCGGAGTGCCTCTTGAAGATGTCCATATCAGTGGTTTTGGACGCGATTATCCACCTACCTGTACATTTCACCTCAAATCCCTTAAAGATCTTAAATGTGATGACTCAGGCATATCAGATGTTATTAAGAGCTTTATAAAGGAGGACGGAAAGCTGAACAAAAACTTTGTCAATACGATGGAGCCTGAGTTTGAAGTCTCAGCTGGTTTACACAAAGGCCTTGGACCCTGCAAACCCCCACCTCCAGCCCCCAACACCCCACCAAAACTATACAACCACATTGACAGACTGGATGTATTCCAGGGACAGGGCTTGCGATTTCACATTCCATATGATTCCTTTTTTGACAAGGAAGATGGATACACGCCAGATCTTTCCCTGAAAATGAACACCATCGATGGCCATGAGCTTTTGAACACTTCCTGGATTTTGCTCAATTCTTCCCGTCAAGAGATTCTTGGATTGCCTGCTGATGTTAATAGAATTGGAATGCACGAGGTTCTCCTTATTGCCAGTGACAAGGAAGGAGCCAGGGCTTATGATGCGTTCGAAGTAAGGGTGCTGGAAGAAGATACTCCCTACAATCACAAATTTAATATTGTTCTAGACTATGACAATGCCACCTTTTTGGGGAAGGTTGGAATAAGAGTTATGCTCTTAGACACCATAGCTGGCTACTTTGGTGTCAACTTTACCAGCGTGCGTGTCGTCAGCTATGCTCCTGGTGTtctgttttccttttattttgattttattccatATGATGACTGCTCACATTCATTGCTGAGGAAGTTGATCGATGATTTCGAGCTTGATGGAGGACTGAATCCAGCCTTTGTAGCGGCTCTTCAACCAGGTTTTAGGGTCAGTGCTGGTTCCTATGAGAGAGTTGGTCCATGCCAACCTGTTAGTGGACCAGAGATTGGTGCGAAGGTGGGTGATCGACCTGGAGGGATATGGTGGACCTATGCCATCATTCCTGCCATTGTACTGGCAATTGTTTTGCTTGTCATAGggtgctgtttgttgatcatgaTGGGATGTTGTCGGAGGAATAAAATGTCAGGAGCTGAGAAGATGACCTACATATATAAGAAAAAACCAGTTGTACTCCAAGAAGAGTACGAGATTAAGGAAATGCTACTGAAACAGCCCCTGGCCCTGCCCAATGAAAAACCTCCAGTTCCCCCTGTCTATCCTCGCAGCCCCGTTATGGGAGGTGATAGAACTCCACTGCTGAATACAGAATCCAAATCAGTATCTTACCGAGCTCCAGTGTATACGTCTAATGGGCAAATGGCAGGCAGTGTCAGTGGAAATGCTGGGTTTGTCCCAaatggaggtggtggtgctgctGGAGGTGGTGAATTGGGTGCAGCTGGTGGTGGCGGTGCTGCTGCTGGAGGGGGTGCCGCAGGTGCTAGTTTGGCTGGAGGAGGTGCAGCTGTAGGGGTTGCAGCTGGAGGCAGTGGTGGTTCAAGTTCTTTTGGAGGGGGAGGTGGTGGCGGTGGTGGTAGTGCAGGTGCAGGAGGAGGATTTGGTGCCAGTGGAGGTGGTGGCATGAGTGCTGGTGGTGGAGGTGGTGCTGGTTCTGGTATGGAATCAGCTGGTGCTGGTGCTGGTGCTGGAAGTGGAACAGGCCAAGGAGGGGGCAGTGGTTTAAGTGTAAGTTACAGTATGGCCACAGGTGGTGGAAGATTCAAGCAGTCCTCTTACAGCTACAGTTACAGCAGCAGTGGTGGCAGTGTTTCAAGCTCAGGTCGCAAGATGGCTTACTCCGGCTACAGGCTCCCTCCAGCCTATGTTCCACCTTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002155 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05454 all species →	DAG1	Dystroglycan (Dystrophin-associated glycoprotein 1)	Family	Interproscan
PF05345 all species →	He_PIG	Putative Ig domain	Domain	Interproscan
PF18424 all species →	a_DG1_N2	Alpha-Dystroglycan N-terminal domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR030398 all species →	Domain	DG-type SEA domain	Interproscan
IPR006644 all species →	Domain	Dystroglycan-type cadherin-like	Interproscan
IPR008465 all species →	Domain	Dystroglycan, C-terminal	Interproscan
IPR027468 all species →	Homologous_superfamily	Alpha-dystroglycan domain 2	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR041631 all species →	Domain	Alpha-dystroglycan N-terminal domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21559 all species →	DYSTROGLYCAN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016010 all species →	Cellular Component	dystrophin-associated glycoprotein complex	Interproscan
GO:0002009 all species →	Biological Process	morphogenesis of an epithelium	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0016011 all species →	Cellular Component	dystroglycan complex	Interproscan
GO:0016203 all species →	Biological Process	muscle attachment	Interproscan
GO:0021675 all species →	Biological Process	nerve development	Interproscan
GO:0042383 all species →	Cellular Component	sarcolemma	Interproscan
GO:0043236 all species →	Molecular Function	laminin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g23830.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.