Gene detail

Detailed information of g239.t1 in Acropora digitifera

Genomic Location: chr1Alt:3617327...3627156
NR annotation: XP_029206097.2, LOW QUALITY PROTEIN: dynein axonemal heavy chain 8-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g239.t1

ATGAGCATGGTGAATGTCATGTACCAGACCTCTCTTCGACAGTTCCTGGGCATATTTGATCTTTCCATGGCTAGATCGGAGAAATCACCGATTCCAGCTAAACGAATCCAGAACATCATCGAGTTTCTGACCTATGAGGCGTTCAAGTATTCCTGCCGTGGTTTGTATGAAAATCACAAGTTCTTATTCACCCTGTTATTGGCGCTCAAGATTGACATACAGGGGGGCAAAGTCAAGGTTCAGGAATTCCAGACCCTCATCAAAGGTGGCGCAGCTCTTGATTTAAAGGCCGTTCAACCCAAGCCCGGCAAATGGATCATGGACATGACATGGCTCAACTTAGTAGAGTTAAAAAAGTTACCGCAGTTTTCAGGAATATTAGATCAGGTTCTTCGAAACGAGTCTGGGTGGAAGCAATGGTTTGACCAAGATGCACCCGAGGAAAGTCTGATCCCTGATGGATATGAAATCTCACTGGACACATTCAGGAAACTTTTGCTCGTCAGATCGTGGTGCCCTGACCGTACTCTGCATCAAGCTCGAAAGTACATCGCAGACACCATGGGTGAGAGATACGCTGAAGGAGTGATCCTGAATCTTGAGGCCACGTGGGAAGAGAGCAACCCACAAGTACCACTTATTTGCTTTCTCTCCATGGGATCGGACCCAACAGGTGCTATCGAGAACCTAGCCAAGCGAAAGGGAATTGAATGCCGAGCAGTGTCCATGGGCCAGGGACAGGAAGTACACGCCAGACGACTTCTGCAGCAATCGATGGCCGGGGGTGGCTGGGTGCTACTTCAGAACTGTCATCTTGGGCTCAACTTTATGGATGAACTGCTGGAGACTGTAACCACTGCTGAATCCTCACATGAAGGCTTCCGAGTGTGGATAACAACAGAGGCGCACAACCAGTTCCCCATCAGCTTGCTACAGTCTTCCATCAAATTCACAAATGAACCGCCACAGGGCGTGAAGCCTGGTCTGAAGAGGACTTACGCGGGCATCACGCAAGATCAGCTAGACATCACCAACATGCCACAATGGAAACCAACTCTCTATGCTGTGGCTTTCTTGCATACTGTTGTCCAGGAACGCCGTAAGTTTGGTCCATTGGGGTGGAACATTCCTTACGAGTTCAATCAGGCTGACTTTGCCGCTAGCATACAGTTCGTGCAAAACCATTTGGATGATATAGATCCAAGGAAGGGCGTATCTTGGAACACAGTGAGGTACATGTTAGGTGAGGTGCAGTATGGAGGCAGAGTTACTGATGATTATGACAAGAGGCTTTTAAACACATTTGCCAAGGTGTGGTTCGGGGAACATATGTTTACCGATGACTTCAATTTCTACACTGGTTATAAGATCCCAAAGTGTCGTAGTTTGGAGCAGTTCTTTGAAGCTATCCAAGCTCTTCCGTCAGTTGATACGCCTCAAGTGTTCGGCTTGCATCCTAATGCTGATATTACTTACCAGAGCAACACTGCCAAAGATGTCCTGGATACTATCATGAGCATTCAACCCAAGGACTCTGGAGGAGGGTCTGGAGAAACGCGTGAAAGTGTGGTAACCAGGCAGGCAGATGACATGCTGGAGAAACTTCCGAACGACTACATACCTCATGAGGTGCGAGCGAGACTTCAGAAGATGGGAGCTCTAGCGTCGATGAATATCTTCCTGAGACAAGAGATTGATCGAATGCAGCGTGTGATCTCTTTGGTGCGCCAGACTCTAACTGATCTTAAACTGGCTATAGAAGGGACTATTATCATGAGTGAGAACCTAAGGGATGCATTAGACAACATGTATGATGCTAGAGTACCTGCATTGTGGAGAAAGATCTCGTGGGAATCATCCACGCTTGGGTTCTGGTTCACGGAGTTCCTGGAGAGAAATAACCAGTTCTCCAACTGGATTTTTAATGGCCGACCTAACGTATTTTGGATGACGGGATTTTTCAATCCTCAGGGATTCCTTACTGCTATGCGACAGGAAGTCACGCGTGCGCACAAAGGCTGGGCCCTTGACTCAGTGGTACTGCATAATGACGTCATAAGGGCTATGAAGGAGGACATCAACTCACCACCATCAGAGGGCGTCTACATTTATGGCTTGTACCTCGATGGCGCTGGGTGGGATCGCCGAGGCTGTAAACTGATTGAACCACAACCTAAAGTGCTATTTACTTTGCTACCAGTAGTTCATGTGTACGCTGTCAACTCCACTGCGCCTAAAGATCCCAGGCTTTACCAGTGTCCTGTGTACAAGAAACCACAGCGTACTGACCTGACTTACATCACCCCATTGTGGCTCAAGACCGTGCAAAGTCCGGATCATTGGATTCTAAGAGGAGTGGCTCTTCTATGTGACATAAAATGA

Transcript

chr1Alt.g239.t1

AACGCGTGGATCTATTCTGTATTTCTTGATTGTGGAGATGAGCATGGTGAATGTCATGTACCAGACCTCTCTTCGACAGTTCCTGGGCATATTTGATCTTTCCATGGCTAGATCGGAGAAATCACCGATTCCAGCTAAACGAATCCAGAACATCATCGAGTTTCTGACCTATGAGGCGTTCAAGTATTCCTGCCGTGGTTTGTATGAAAATCACAAGTTCTTATTCACCCTGTTATTGGCGCTCAAGATTGACATACAGGGGGGCAAAGTCAAGGTTCAGGAATTCCAGACCCTCATCAAAGGTGGCGCAGCTCTTGATTTAAAGGCCGTTCAACCCAAGCCCGGCAAATGGATCATGGACATGACATGGCTCAACTTAGTAGAGTTAAAAAAGTTACCGCAGTTTTCAGGAATATTAGATCAGGTTCTTCGAAACGAGTCTGGGTGGAAGCAATGGTTTGACCAAGATGCACCCGAGGAAAGTCTGATCCCTGATGGATATGAAATCTCACTGGACACATTCAGGAAACTTTTGCTCGTCAGATCGTGGTGCCCTGACCGTACTCTGCATCAAGCTCGAAAGTACATCGCAGACACCATGGGTGAGAGATACGCTGAAGGAGTGATCCTGAATCTTGAGGCCACGTGGGAAGAGAGCAACCCACAAGTACCACTTATTTGCTTTCTCTCCATGGGATCGGACCCAACAGGTGCTATCGAGAACCTAGCCAAGCGAAAGGGAATTGAATGCCGAGCAGTGTCCATGGGCCAGGGACAGGAAGTACACGCCAGACGACTTCTGCAGCAATCGATGGCCGGGGGTGGCTGGGTGCTACTTCAGAACTGTCATCTTGGGCTCAACTTTATGGATGAACTGCTGGAGACTGTAACCACTGCTGAATCCTCACATGAAGGCTTCCGAGTGTGGATAACAACAGAGGCGCACAACCAGTTCCCCATCAGCTTGCTACAGTCTTCCATCAAATTCACAAATGAACCGCCACAGGGCGTGAAGCCTGGTCTGAAGAGGACTTACGCGGGCATCACGCAAGATCAGCTAGACATCACCAACATGCCACAATGGAAACCAACTCTCTATGCTGTGGCTTTCTTGCATACTGTTGTCCAGGAACGCCGTAAGTTTGGTCCATTGGGGTGGAACATTCCTTACGAGTTCAATCAGGCTGACTTTGCCGCTAGCATACAGTTCGTGCAAAACCATTTGGATGATATAGATCCAAGGAAGGGCGTATCTTGGAACACAGTGAGGTACATGTTAGGTGAGGTGCAGTATGGAGGCAGAGTTACTGATGATTATGACAAGAGGCTTTTAAACACATTTGCCAAGGTGTGGTTCGGGGAACATATGTTTACCGATGACTTCAATTTCTACACTGGTTATAAGATCCCAAAGTGTCGTAGTTTGGAGCAGTTCTTTGAAGCTATCCAAGCTCTTCCGTCAGTTGATACGCCTCAAGTGTTCGGCTTGCATCCTAATGCTGATATTACTTACCAGAGCAACACTGCCAAAGATGTCCTGGATACTATCATGAGCATTCAACCCAAGGACTCTGGAGGAGGGTCTGGAGAAACGCGTGAAAGTGTGGTAACCAGGCAGGCAGATGACATGCTGGAGAAACTTCCGAACGACTACATACCTCATGAGGTGCGAGCGAGACTTCAGAAGATGGGAGCTCTAGCGTCGATGAATATCTTCCTGAGACAAGAGATTGATCGAATGCAGCGTGTGATCTCTTTGGTGCGCCAGACTCTAACTGATCTTAAACTGGCTATAGAAGGGACTATTATCATGAGTGAGAACCTAAGGGATGCATTAGACAACATGTATGATGCTAGAGTACCTGCATTGTGGAGAAAGATCTCGTGGGAATCATCCACGCTTGGGTTCTGGTTCACGGAGTTCCTGGAGAGAAATAACCAGTTCTCCAACTGGATTTTTAATGGCCGACCTAACGTATTTTGGATGACGGGATTTTTCAATCCTCAGGGATTCCTTACTGCTATGCGACAGGAAGTCACGCGTGCGCACAAAGGCTGGGCCCTTGACTCAGTGGTACTGCATAATGACGTCATAAGGGCTATGAAGGAGGACATCAACTCACCACCATCAGAGGGCGTCTACATTTATGGCTTGTACCTCGATGGCGCTGGGTGGGATCGCCGAGGCTGTAAACTGATTGAACCACAACCTAAAGTGCTATTTACTTTGCTACCAGTAGTTCATGTGTACGCTGTCAACTCCACTGCGCCTAAAGATCCCAGGCTTTACCAGTGTCCTGTGTACAAGAAACCACAGCGTACTGACCTGACTTACATCACCCCATTGTGGCTCAAGACCGTGCAAAGTCCGGATCATTGGATTCTAAGAGGAGTGGCTCTTCTATGTGACATAAAATGAACGGGGGTTTCTATTTCCATTACGTATTACTTCTTGGTTTCTTTTACAACTCCCCTTTAGTTAAGTTTAGTACTTCAGGGAAAACTTGCCATCAATTTTAGTAGTCGTAAGAACTTTTATCAACGTTCTTAATCGTTAAAGCTTTGTCATTGTTTTCCTCTTAATGCTTCCCCTTTCGATAACTTGTTAAAAGATCTTTCAAAAATGAATAAAATGACCGATAAACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96JB1	Dynein axonemal heavy chain 8 OS=Homo sapiens OX=9606 GN=DNAH8 PE=1 SV=2
Q91XQ0	Dynein axonemal heavy chain 8 OS=Mus musculus OX=10090 GN=Dnah8 PE=1 SV=2
Q8VHE6	Dynein axonemal heavy chain 5 OS=Mus musculus OX=10090 GN=Dnah5 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18199 all species →	Dynein_C	Dynein heavy chain C-terminal domain	Domain	Interproscan
PF18198 all species →	AAA_lid_11	Dynein heavy chain AAA lid domain	Domain	Interproscan
PF03028 all species →	Dynein_heavy	Dynein heavy chain region D6 P-loop domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR042219 all species →	Homologous_superfamily	Dynein heavy chain AAA lid domain superfamily	Interproscan
IPR041228 all species →	Domain	Dynein heavy chain, C-terminal domain	Interproscan
IPR043160 all species →	Homologous_superfamily	Dynein heavy chain, C-terminal domain, barrel region	Interproscan
IPR026983 all species →	Family	Dynein heavy chain	Interproscan
IPR041658 all species →	Domain	Dynein heavy chain AAA lid domain	Interproscan
IPR004273 all species →	Domain	Dynein heavy chain region D6 P-loop domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46961 all species →	DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0030286 all species →	Cellular Component	dynein complex	Interproscan
GO:0045505 all species →	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan
GO:0008569 all species →	Molecular Function	minus-end-directed microtubule motor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g239.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g239.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

6TPM > 0

1Conditions

14.5Max TPM

0.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	6	0.56	14.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	14.55
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	1.68
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	1.61
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	1.61
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	1.17
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	1.10
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	0.00

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.