Detailed information of g239.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCH9704725.1, hydroxyphenylacetyl-CoA thioesterase PaaI [Pseudomonadota bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P76084Acyl-coenzyme A thioesterase PaaI OS=Escherichia coli (strain K12) OX=83333 GN=paaI PE=1 SV=1
O28020Putative esterase AF_2264 OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=AF_2264 PE=3 SV=1
Q9RS06Putative esterase DR_2321 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1) OX=243230 GN=DR_2321 PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilyHMG
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07885Ion_trans_2Ion channelFamilyInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF030614HBTThioesterase superfamilyDomainInterproscan
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013099DomainPotassium channel domainInterproscan
IPR003280FamilyTwo pore domain potassium channelInterproscan
IPR038774FamilyCentrosomal protein CEP162-likeInterproscan
IPR042411FamilyWD repeat-containing protein 27Interproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR003736DomainPhenylacetic acid degradation-related domainInterproscan
IPR029069Homologous_superfamilyHotDog domain superfamilyInterproscan
IPR006683DomainThioesterase domainInterproscan
IPR052723FamilyAcyl-coenzyme A thioesterase PaaIInterproscan
IPR011973FamilyPhenylacetic acid degradation protein PaaDInterproscan
IPR009071DomainHigh mobility group box domainInterproscan
IPR042477FamilyHMG domain-containing protein 4Interproscan
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11003POTASSIUM CHANNEL, SUBFAMILY KInterproscan
PTHR33995PROTEIN CBG18546Interproscan
PTHR34031CENTROSOMAL PROTEIN OF 162 KDAInterproscan
PTHR44525WD REPEAT-CONTAINING PROTEIN 27Interproscan
PTHR44281SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOGInterproscan
PTHR42856ACYL-COENZYME A THIOESTERASE PAAIInterproscan
PTHR46584HMG DOMAIN-CONTAINING PROTEIN 4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005267Molecular Functionpotassium channel activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0015271Molecular Functionoutward rectifier potassium channel activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0022841Molecular Functionpotassium ion leak channel activityInterproscan
GO:0030322Biological Processstabilization of membrane potentialInterproscan
GO:0071805Biological Processpotassium ion transmembrane transportInterproscan
GO:0005813Cellular ComponentcentrosomeInterproscan
GO:0005814Cellular ComponentcentrioleInterproscan
GO:0005879Cellular Componentaxonemal microtubuleInterproscan
GO:0060271Biological Processcilium assemblyInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0007099Biological Processcentriole replicationInterproscan
GO:0016289Molecular Functionacyl-CoA hydrolase activityInterproscan
GO:0016790Molecular Functionthiolester hydrolase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11298HMGXB4, HMG2L1; HMG domain-containing protein 4-Chromosome and associated proteinsko03036deepkoala

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