Gene detail

Detailed information of g23932.t2 in Acropora digitifera

Genomic Location: chr11Alt:14290098...14303306
NR annotation: XP_044172413.1, LOW QUALITY PROTEIN: titin-like [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr11Alt.g23932.t2

AATTTCACTTTCTTTCGTTGCAAATTTTTGCTAATTAATCCGGGCACAATTCAACATTTTTCATCGAGTGATAAAAAAAAGTTTGATCCAGTTGAACCTCGTGGAATCCCGCGTTGTCTGACTTTTGATCTTCACCGCTTCGATTTTATTTTCAAATGAGTTCTTCGTATTCTCGGTTGAACGGATCCACGGCAGCTTCTGCCGAGCGAAGGTCTGACAAATCGTTGCAAAGCCAGGATTTCAACGCAAACCAGCGTTCCGAAGAGCGAAGGGCGAGAAGAAGATTGCGAAGAGCACAACCTAAATTTATCCGAGAGCTCCAGGATGTCGAAGTGTGCGTCGGTGAACCAGCAAAGCTTCGCTGTCGAGTTGAAGGAGATCCCTTCCCTGACATCGAATGGTTTGTGGACGGTGACAAAATCAAGAAAGGCGGGAGATTCGATTTTACAACTGATGGAGACCTCGTGACACTGAAAATTTCTGAAACAAGCGCCTTGGACGAAGGAGAGTACCAATGTACAGCCACAAATGAAAACGGCACGGTTTCTTCTTCTGCTGAACTCATTGTCAACGCCCCAGCCAAAATTGAGAAAGCAGCCAAGTCACAGACCGCCCACATTGGTGACACAGTCGCTTTCAAATGCGATATCTCTGGGAACCCAATCCCATCCGTGACCTGGGGCAAGGGAAAAAGACTGCTGAAGGACGAGGGCCGCGTGCTAATTGAGACAGCCGAAGATTTCTCAGAGCTTGAAATCGAGAATGTCGTGAAATCGGACGAAGGAGAGTACACTTGCCTTGTGAAGAACGACTTCGGAGAAGACACGTCTTATGTGACACTCACCATTAGAGATGAAGAAGCCGCTGGTAAAAAATCCGAAGCAGCATTCTCTCAAGAAAGCTCATCAGGTGATAGTGACGTGGAGAGTAAAGATCTTGACCTTCCTCCGCGAGACCCTGTCCACCTTGCAACTGACAAGAAATTTGATGAGAACTATTCCTCCATTAAGGAGCTGGGGAAGGGGAAATTCGGAGTTGTCAAGAAGGTTAAAGAGAAGAGCACCGGGACAGAATACGCTGCTAAGTTTCTGAAGATAACAAAGGAGTCTCGTGAAGAAGTGTTGGCAGAGATGTTGATTATGAACAAGTTACATAGCAAAAGGCTCATTTATCTTCATGACGCATATGAGCGACCAAAAGAAATGATCATTGTTCTTGAGCTAATTTCTGGCGGCGAGCTCTTTGAGAAAGTTTGCAGTGATGACGACTTGACTGAGAAGGAAGTTGTGCGATACATGAAGCAAATACTGCAAGGGGTTGAACACATGCACAAGAAGAGAATTGTCCATTTAGATCTCAAACCTGAGAATGTCCTTTGTGTGATCCGCCCTGATGGTAAAGAAGATCTCAAGTTGATTGACTTTGGAATGGCGCGTGTATTAGAACAGGGAAAGTCCTACAAAGTAGCTTGTGGAACGCCTGAATTTGTTGCTCCTGAAGTCATCAGCTACGAGCCGATCAGCCTGTCCAGCGACATGTGGAGCGTCGGTGTAATTGCATATGTGTTGCTCAGTGGGTTGTCGCCTTTCATGGGAGATGATGACAATGAAACGATTCAGAATGTGTCAAATGCCGAGTGGGATTTTGAAGATGAGGCATTTGACGTTGTTTCTGACATGTCCAAGAAATTCATCGAAGAGCTACTTATAAGAGACCCTGGGAAACGAAGTGACGTGTTCCATTGCTTGAACCACGATTGGCTGAAGAAAATCAAGTCGATCAAAACCCAGAAGCTCAGCACGGAGAATTTGAAGAAATTCATTGCTCGTCGTCGTTGGGCAAGAACAGCCAACGCTCTTCGTGCTTTGAGCCGAATGGGCAATTTAAGTGGTCTTATGTCCGGGAAGGGCGGGGCAGCAGGAGGTGCGGCCGCCCGCAATCACGATTCCAAGGCAGCAAGTAAAGAAGCCAACGAAACTGCAGATAGACATCTGGCTGCGTTGTTTTTGATTTCCTATGGGGATGACTGTCCGTTGTAGCTTGCTGCAGTCGCTTGCATATTTACGATAAGGTATTTGTAATGACGCGGGTGCTGTACAAGTAAAGTTCATTGGGTTTCAATTAAAAGGTCTCATTGCAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P29294	Myosin light chain kinase, smooth muscle OS=Oryctolagus cuniculus OX=9986 GN=MYLK PE=1 SV=2
Q28824	Myosin light chain kinase, smooth muscle OS=Bos taurus OX=9913 GN=MYLK PE=1 SV=1
O02827	Myosin light chain kinase, smooth muscle (Fragment) OS=Ovis aries OX=9940 GN=MYLK PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24342 all species →	SERINE/THREONINE-PROTEIN KINASE 17	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0043065 all species →	Biological Process	positive regulation of apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00907	MYLK; myosin-light-chain kinase	EC:2.7.11.18	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.