Gene detail

Detailed information of g2425.t1 in Acropora digitifera

Genomic Location: chr1Alt:37709468...37719406
NR annotation: XP_015752045.1, PREDICTED: uncharacterized protein LOC107331901 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2425.t1

ATGGTTCATGATGAACGTTCGCGCTTCGTGGAACTTCCAAATTACAACGAAGAAAGATGGAAGAAAATGAAAGAACTCTTTGCCGAGTTGGATGGTATTCGAACTGCAAATCCTCTGGTTGAGGTGTTGCGAAAGATGTTCGCAGAATCTGGAAATTACGTGGATCAATTCAAGCAAGAAAGCTCAACACCTGATGACCTTTTGAATTTAGATTCGGCGGTCGGATCAAGTTGGGCTTTTAAAGGCCTGGAGATATTTTTAGAGGAATTGGCAACGGAGGAAGAAAGAGAAAACTTTTTTGATGCCATTCTTCCGTTTATTGTTTTTCTTGCATCAAGTATTGAAATGTTTTCACCGAAGGAGGGTATTCTTCTGTTTGTGCAACAATGCGAATCTGTTATGGCTGTAGACAAGAGGTTTATAGCTTGTGTTCTTGCATCAGCTTTCCTGTGCTGTCTACCTCCACCACCACCAGATGCTCTGGTGAGATCACTCAATTTCAACAATTTCTTTGCATGTTTCCACAGAGAGGAAATTCAGAAAACACAAGCTGCTAAGTTGCGCTGCATTATCCACTACTTTGAAAGACTTAGCATTGACTGGCCTGGCATTCAAGGAAGGGTGTTTTATAGCCGTCAGGTACTGCCGCAGAATTCTCTTCCTAATTTAGAGGACTGGATGTCGTGTGATTTACCTCTTTGTCCTGTGGTTATTGACAGTAAGACTGCTGTTGAAGATTCTGGAGAGCACCTGCTTCAGGTTGTCTTTGCCAATGATATCATTGGAGGAGGTGTTTTAGGTGGAGATCATTTTCAGGAAGAAATCAGATTCTGTATCAACCCTGAATTGCTTTTAGCAATTATGTTTGCAGAGGCCATGCAAGACAATGAATGTATTGTGGTTAGGGGAATTGAAAGGTTTTCATCTTATGCAGGATATGGCAAAACATTTGAGTTTGCCAGTGATTTCAAGGATAAGTCACAACGTGATGACAATGGTGATTTTCTAACAACAGTTGTGGCAATGGATGCTAAACAGTTTAAACGTTCACACAAAGAGGCTCAATATGAAGAAGCTGCTGTTGTTAGAGAACTGAACAAAGCTTTTGTTGCATTCTTTAACCCAGTAGTTGGCTCTCGTCTGATCAAATTGATTTCAGGTGTGAAAGCTGATAATGAGGATAAAGAGATTTTAGAGAATGAGGTAGGTTGGTCAAAGGAAGAATCAAATATGACTCCCTCTGCGGATGAAATGATTGTGGAGTTCAGCAATGAGCTGGTTAATCATACGCTGAATGAAGCCTTTACAGCTGTCGATGCAAACAACAATGCTGTCATCTCAGAAGCTCATGAAGATGCTGATGATATTTTAACACCGATCATGAAGAAATCGTTGATCGATGTTTTTGGTAGATCGTCCGAAAAAGCTCGAACATATTCTGAAAATCTGCTGAGCCCAACGCCACTGCCAAAATGTTTGGAGAGAACTTTTAGTGGTACAGATACTCCTGTCGTTCCGAGTACTCCTCCGTCCTCTCCAGCAGTGTGGGAAAAAGAGGAAAAATCACTAGAAAGCCATGGTTTTCACGCTCTCTTGTCAAACCATAGCACTGCTTTCCAAAAAAGCTTCGCTGAATCGCTCTCCAACACGCTAAAGTCATGTTTTGAGGTGACGTCATCCCTAGCAATTTCCATCGCAACGTCTGCTAAGTCACCTGTTCTCGCTGTAACAGACACTAAAGAGTCATTCCGTAAAAGCCCGCGATATTTAGGGTCTCCCGTTAAAAATGGCAATAGTATAATTTCTTTTATGAATCAAAGCTTCGTAGATTCAGATTTATCACCCAGCGAAACGTTTTCCAATCCCGTGAATATCTCCGAAGTTGTAGAAGATTTGTCGTCGTTAGTAAATTTGTTCAAGAGAGACAATGGTTGTAAAGGTTATTGGAAGCAGGCATCGTTCAACGCCAGACAAAATCTCCTAGTGGAGTTTGATCAAGCTAATAATGATGAAAGTAATAAGGAAAATAGCAAAGCGTATCAAGAAGCCAGCCAATCGGATAAAGTAGTAATAGAAGAATTTGCGATGAAGCTATCAGGGTTGGTTCTGAAATCATCGATCGGTCATTCAGTGTTTTCCATGGAGGAAGAAGGAATCGAGGGTGGAGAGTGTGAGAGATCAGCTGGGTTACTGGCTTTCCAAACTAGACAAGGTGGCAAAAGCACCCGAGCCGATGCTCCAACTGAAGAAGAAGCAGAGACAGAAAATATTCATTTGAAAACTATCGTGGAGGGTCACGTGGATGCTGTTCTGGAGAAAATAATTGCCACATGTTTACCTGAAGCTGCGCATTTGACATGCGCAGATGAACACGTGGAAAGAGAGAAAGAAGTAGAAAGGAAACTGCCGCCATCTCATACTGATGATCAATGGCGTTGGAAATCAACGGACAGTGCGGCCATGAGTAATACAAACTCATTACCGCCGCAATTTTCAGAAGAAGCCAGCTTTTCTTGTGAAGAGCTGTCTATTGTGATCCCTGAAGTTGTTATTCAGACTGCAGAGAACCTTGCTAAAAATATTGTTTTTGCTGGGTTGTCGCAAACTTCGGAAATATTGCAAAGAGAAAGACGTGTATGGATGGATGAAAATGAAGGATGCAGAAAGGCTGAATCACAGCTTGAGGTCAAGGAAATTCACAATTCTAAACAGCTCTCTTTCTCCGGTGCGCTGTCATGTTTTGCTGAAAATCTCAGCAGCTTGACAGTTAGTGGCGCGGTTAAGATTGCCTGTGTGCAGTTTGAAATACAGAGCATGAAGTCAGCAGCACGCCCTGTGGCAATAGGAAACTGGGGCTGTGGTATGTCCCATGGAGACCTGGAGCTCAAGGCTGTCATTCAGTGGGTAGCCGCTTCAGCTGCGGGCTGTCCCGTGCTTGCTTATCACGCCCTCGCTGACCAGAGAATTTCTGGGCTTCTCAAGACAGTCGTCTGTTTACGTTCGCGTGGCTGGAAAGTCTCTGATGTCATTCACAGAGTCATTAAATTCTGTGAGTCTGTCAGGGACAAGGAAGATGAGGCTGTTGGACAGCAAGGATTTCTTTCTTTCCTTTGTCAGACACCGCAAACATCTCTATAG

Transcript

chr1Alt.g2425.t1

AAATATTACCCTGTTTTGATCTTGTAAGTTGCTCGCTCTCATCATGGTTCATGATGAACGTTCGCGCTTCGTGGAACTTCCAAATTACAACGAAGAAAGATGGAAGAAAATGAAAGAACTCTTTGCCGAGTTGGATGGTATTCGAACTGCAAATCCTCTGGTTGAGGTGTTGCGAAAGATGTTCGCAGAATCTGGAAATTACGTGGATCAATTCAAGCAAGAAAGCTCAACACCTGATGACCTTTTGAATTTAGATTCGGCGGTCGGATCAAGTTGGGCTTTTAAAGGCCTGGAGATATTTTTAGAGGAATTGGCAACGGAGGAAGAAAGAGAAAACTTTTTTGATGCCATTCTTCCGTTTATTGTTTTTCTTGCATCAAGTATTGAAATGTTTTCACCGAAGGAGGGTATTCTTCTGTTTGTGCAACAATGCGAATCTGTTATGGCTGTAGACAAGAGGTTTATAGCTTGTGTTCTTGCATCAGCTTTCCTGTGCTGTCTACCTCCACCACCACCAGATGCTCTGGTGAGATCACTCAATTTCAACAATTTCTTTGCATGTTTCCACAGAGAGGAAATTCAGAAAACACAAGCTGCTAAGTTGCGCTGCATTATCCACTACTTTGAAAGACTTAGCATTGACTGGCCTGGCATTCAAGGAAGGGTGTTTTATAGCCGTCAGGTACTGCCGCAGAATTCTCTTCCTAATTTAGAGGACTGGATGTCGTGTGATTTACCTCTTTGTCCTGTGGTTATTGACAGTAAGACTGCTGTTGAAGATTCTGGAGAGCACCTGCTTCAGGTTGTCTTTGCCAATGATATCATTGGAGGAGGTGTTTTAGGTGGAGATCATTTTCAGGAAGAAATCAGATTCTGTATCAACCCTGAATTGCTTTTAGCAATTATGTTTGCAGAGGCCATGCAAGACAATGAATGTATTGTGGTTAGGGGAATTGAAAGGTTTTCATCTTATGCAGGATATGGCAAAACATTTGAGTTTGCCAGTGATTTCAAGGATAAGTCACAACGTGATGACAATGGTGATTTTCTAACAACAGTTGTGGCAATGGATGCTAAACAGTTTAAACGTTCACACAAAGAGGCTCAATATGAAGAAGCTGCTGTTGTTAGAGAACTGAACAAAGCTTTTGTTGCATTCTTTAACCCAGTAGTTGGCTCTCGTCTGATCAAATTGATTTCAGGTGTGAAAGCTGATAATGAGGATAAAGAGATTTTAGAGAATGAGGTAGGTTGGTCAAAGGAAGAATCAAATATGACTCCCTCTGCGGATGAAATGATTGTGGAGTTCAGCAATGAGCTGGTTAATCATACGCTGAATGAAGCCTTTACAGCTGTCGATGCAAACAACAATGCTGTCATCTCAGAAGCTCATGAAGATGCTGATGATATTTTAACACCGATCATGAAGAAATCGTTGATCGATGTTTTTGGTAGATCGTCCGAAAAAGCTCGAACATATTCTGAAAATCTGCTGAGCCCAACGCCACTGCCAAAATGTTTGGAGAGAACTTTTAGTGGTACAGATACTCCTGTCGTTCCGAGTACTCCTCCGTCCTCTCCAGCAGTGTGGGAAAAAGAGGAAAAATCACTAGAAAGCCATGGTTTTCACGCTCTCTTGTCAAACCATAGCACTGCTTTCCAAAAAAGCTTCGCTGAATCGCTCTCCAACACGCTAAAGTCATGTTTTGAGGTGACGTCATCCCTAGCAATTTCCATCGCAACGTCTGCTAAGTCACCTGTTCTCGCTGTAACAGACACTAAAGAGTCATTCCGTAAAAGCCCGCGATATTTAGGGTCTCCCGTTAAAAATGGCAATAGTATAATTTCTTTTATGAATCAAAGCTTCGTAGATTCAGATTTATCACCCAGCGAAACGTTTTCCAATCCCGTGAATATCTCCGAAGTTGTAGAAGATTTGTCGTCGTTAGTAAATTTGTTCAAGAGAGACAATGGTTGTAAAGGTTATTGGAAGCAGGCATCGTTCAACGCCAGACAAAATCTCCTAGTGGAGTTTGATCAAGCTAATAATGATGAAAGTAATAAGGAAAATAGCAAAGCGTATCAAGAAGCCAGCCAATCGGATAAAGTAGTAATAGAAGAATTTGCGATGAAGCTATCAGGGTTGGTTCTGAAATCATCGATCGGTCATTCAGTGTTTTCCATGGAGGAAGAAGGAATCGAGGGTGGAGAGTGTGAGAGATCAGCTGGGTTACTGGCTTTCCAAACTAGACAAGGTGGCAAAAGCACCCGAGCCGATGCTCCAACTGAAGAAGAAGCAGAGACAGAAAATATTCATTTGAAAACTATCGTGGAGGGTCACGTGGATGCTGTTCTGGAGAAAATAATTGCCACATGTTTACCTGAAGCTGCGCATTTGACATGCGCAGATGAACACGTGGAAAGAGAGAAAGAAGTAGAAAGGAAACTGCCGCCATCTCATACTGATGATCAATGGCGTTGGAAATCAACGGACAGTGCGGCCATGAGTAATACAAACTCATTACCGCCGCAATTTTCAGAAGAAGCCAGCTTTTCTTGTGAAGAGCTGTCTATTGTGATCCCTGAAGTTGTTATTCAGACTGCAGAGAACCTTGCTAAAAATATTGTTTTTGCTGGGTTGTCGCAAACTTCGGAAATATTGCAAAGAGAAAGACGTGTATGGATGGATGAAAATGAAGGATGCAGAAAGGCTGAATCACAGCTTGAGGTCAAGGAAATTCACAATTCTAAACAGCTCTCTTTCTCCGGTGCGCTGTCATGTTTTGCTGAAAATCTCAGCAGCTTGACAGTTAGTGGCGCGGTTAAGATTGCCTGTGTGCAGTTTGAAATACAGAGCATGAAGTCAGCAGCACGCCCTGTGGCAATAGGAAACTGGGGCTGTGGTATGTCCCATGGAGACCTGGAGCTCAAGGCTGTCATTCAGTGGGTAGCCGCTTCAGCTGCGGGCTGTCCCGTGCTTGCTTATCACGCCCTCGCTGACCAGAGAATTTCTGGGCTTCTCAAGACAGTCGTCTGTTTACGTTCGCGTGGCTGGAAAGTCTCTGATGTCATTCACAGAGTCATTAAATTCTGTGAGTCTGTCAGGGACAAGGAAGATGAGGCTGTTGGACAGCAAGGATTTCTTTCTTTCCTTTGTCAGACACCGCAAACATCTCTATAGGGAAAGGCATGTCCTTAATTTGTAGGTAGGTAGACTGTTAATTTGTAGGCAAGAATTGAATACTGAGTGTTTGTAGAAAGTTATCCATCGGGTTGGGGTTCCAATTCTAACTTGAAACAGACCAGACATATCAAGTGACGTATGCTTCCGAACTTTGATTCCTCCTTTTAACTAATTGCTACATTGCGTAGCAATTGCAATCGCGTGATACTTTTGCCAGCCGATTAAAAACTACTGTACTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QYM2	Poly(ADP-ribose) glycohydrolase OS=Rattus norvegicus OX=10116 GN=Parg PE=1 SV=1
O88622	Poly(ADP-ribose) glycohydrolase OS=Mus musculus OX=10090 GN=Parg PE=1 SV=2
Q86W56	Poly(ADP-ribose) glycohydrolase OS=Homo sapiens OX=9606 GN=PARG PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05028 all species →	PARG_cat_C	Poly (ADP-ribose) glycohydrolase (PARG), Macro domain fold	Domain	Interproscan
PF20811 all species →	PARG_cat_N	Poly (ADP-ribose) glycohydrolase (PARG), helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046372 all species →	Domain	Poly (ADP-ribose) glycohydrolase (PARG), catalytic domain	Interproscan
IPR048362 all species →	Domain	Poly (ADP-ribose) glycohydrolase, helical domain	Interproscan
IPR007724 all species →	Family	Poly(ADP-ribose) glycohydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12837 all species →	POLY ADP-RIBOSE GLYCOHYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004649 all species →	Molecular Function	poly(ADP-ribose) glycohydrolase activity	Interproscan
GO:0006282 all species →	Biological Process	regulation of DNA repair	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0009225 all species →	Biological Process	nucleotide-sugar metabolic process	Interproscan
GO:1990966 all species →	Biological Process	ATP generation from poly-ADP-D-ribose	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07759	PARG; poly(ADP-ribose) glycohydrolase	EC:3.2.1.143	Base excision repair	ko03410	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g2425.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

17.1Max TPM

12.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	12.05	17.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	17.11
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	15.95
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	15.55
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	15.48
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	14.57
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	14.20
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	14.02
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	13.99
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	13.81
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	13.31
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	13.31
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	13.25
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	13.16
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	13.13
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	12.81
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	12.69
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	12.47
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	12.30
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	12.29
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	12.05
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	11.99
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	11.87
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	11.61
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	11.56
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	11.54
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	11.26
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	11.06
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	10.67
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	10.07
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	9.90
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	9.85
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	9.79
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	9.50
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	9.48
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	9.28
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	9.04
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	8.99
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	8.80
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	8.16

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.