Gene detail

Detailed information of g243.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: MBE0494517.1, nucleotide sugar dehydrogenase [Thiomicrospira sp.]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9RHD7	UDP-N-acetyl-D-glucosamine 6-dehydrogenase OS=Pseudomonas aeruginosa OX=287 GN=wbpO PE=1 SV=1
Q04972	UDP-N-acetyl-D-glucosamine 6-dehydrogenase OS=Salmonella typhi OX=90370 GN=wcdA PE=1 SV=1
P39861	Protein CapL OS=Staphylococcus aureus OX=1280 GN=capL PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000001 (this species only)
Orthogroup (gene family)	OG0000010 (this species only)
Orthogroup (gene family)	OG0000050 (this species only)
Orthogroup (gene family)	OG0001432 (this species only)
Orthogroup (gene family)	OG0002939 (this species only)
Orthogroup (gene family)	OG0003540 (this species only)
Orthogroup (gene family)	OG0004137 (this species only)
Orthogroup (gene family)	OG0004183 (this species only)
Orthogroup (gene family)	OG0004617 (this species only)
Orthogroup (gene family)	OG0004970 (this species only)
Orthogroup (gene family)	OG0010823 (this species only)
Orthogroup (gene family)	OG0016447 (this species only)
Orthogroup (gene family)	OG0041218 (this species only)
Orthogroup (gene family)	OG0048324 (this species only)
Orthogroup (gene family)	OG0080479 (this species only)
Ubiquitin family	UBD\|UBC-like\|UBC · all ubiquitin genes in this species
Ubiquitin family	E2\|UEV\|UEV · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF02210 all species →	Laminin_G_2	Laminin G domain	Domain	Interproscan
PF00054 all species →	Laminin_G_1	Laminin G domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00254 all species →	FKBP_C	FKBP-type peptidyl-prolyl cis-trans isomerase	Domain	Interproscan
PF00984 all species →	UDPG_MGDP_dh	UDP-glucose/GDP-mannose dehydrogenase family, central domain	Domain	Interproscan
PF03720 all species →	UDPG_MGDP_dh_C	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain	Domain	Interproscan
PF02894 all species →	GFO_IDH_MocA_C	Oxidoreductase family, C-terminal alpha/beta domain	Domain	Interproscan
PF03721 all species →	UDPG_MGDP_dh_N	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain	Domain	Interproscan
PF01408 all species →	GFO_IDH_MocA	Oxidoreductase family, NAD-binding Rossmann fold	Family	Interproscan
PF01663 all species →	Phosphodiest	Type I phosphodiesterase / nucleotide pyrophosphatase	Family	Interproscan
PF14529 all species →	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF03571 all species →	Peptidase_M49	Peptidase family M49	Family	Interproscan
PF05207 all species →	zf-CSL	CSL zinc finger	Domain	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF10239 all species →	DUF2465	Protein of unknown function (DUF2465)	Family	Interproscan
PF13359 all species →	DDE_Tnp_4	DDE superfamily endonuclease	Domain	Interproscan
PF00179 all species →	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001791 all species →	Domain	Laminin G domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR046357 all species →	Homologous_superfamily	Peptidyl-prolyl cis-trans isomerase domain superfamily	Interproscan
IPR001179 all species →	Domain	FKBP-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR051022 all species →	Family	Notch Signaling and Cell Fate Determination	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR028359 all species →	Family	UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase	Interproscan
IPR014026 all species →	Domain	UDP-glucose/GDP-mannose dehydrogenase, dimerisation	Interproscan
IPR017476 all species →	Family	UDP-glucose/GDP-mannose dehydrogenase	Interproscan
IPR036220 all species →	Homologous_superfamily	UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR014027 all species →	Domain	UDP-glucose/GDP-mannose dehydrogenase, C-terminal	Interproscan
IPR004104 all species →	Domain	Gfo/Idh/MocA-like oxidoreductase, C-terminal	Interproscan
IPR001732 all species →	Domain	UDP-glucose/GDP-mannose dehydrogenase, N-terminal	Interproscan
IPR000683 all species →	Domain	Gfo/Idh/MocA-like oxidoreductase, N-terminal	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR017850 all species →	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR002591 all species →	Family	Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR039461 all species →	Family	Peptidase family M49	Interproscan
IPR036671 all species →	Homologous_superfamily	DPH-type metal-binding domain superfamily	Interproscan
IPR007872 all species →	Domain	DPH-type metal-binding domain	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR050305 all species →	Family	Small GTPase superfamily, Rab	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR018797 all species →	Family	FAM98	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR036716 all species →	Homologous_superfamily	Pesticidal crystal protein, N-terminal domain superfamily	Interproscan
IPR027806 all species →	Domain	Harbinger transposase-derived nuclease domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR052160 all species →	Family	Gypsy Retrotransposon Integrase-like	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR023313 all species →	Active_site	Ubiquitin-conjugating enzyme, active site	Interproscan
IPR050113 all species →	Family	Ubiquitin-conjugating enzyme	Interproscan
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR000608 all species →	Domain	Ubiquitin-conjugating enzyme E2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049 all species →	CRUMBS FAMILY MEMBER	Interproscan
PTHR43491 all species →	UDP-N-ACETYL-D-MANNOSAMINE DEHYDROGENASE	Interproscan
PTHR10151 all species →	ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE	Interproscan
PTHR46670 all species →	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR23422 all species →	DIPEPTIDYL PEPTIDASE III-RELATED	Interproscan
PTHR21454 all species →	DPH3 HOMOLOG-RELATED	Interproscan
PTHR47980 all species →	LD44762P	Interproscan
PTHR22968 all species →	PROTEIN KINASE C, MU	Interproscan
PTHR22930 all species →	UNCHARACTERIZED	Interproscan
PTHR47266 all species →	ENDONUCLEASE-RELATED	Interproscan
PTHR24067 all species →	UBIQUITIN-CONJUGATING ENZYME E2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0003755 all species →	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0000271 all species →	Biological Process	polysaccharide biosynthetic process	Interproscan
GO:0016628 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008239 all species →	Molecular Function	dipeptidyl-peptidase activity	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006904 all species →	Biological Process	vesicle docking involved in exocytosis	Interproscan
GO:0008021 all species →	Cellular Component	synaptic vesicle	Interproscan
GO:0009306 all species →	Biological Process	protein secretion	Interproscan
GO:0017157 all species →	Biological Process	regulation of exocytosis	Interproscan
GO:0030140 all species →	Cellular Component	trans-Golgi network transport vesicle	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0043197 all species →	Cellular Component	dendritic spine	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0048210 all species →	Biological Process	Golgi vesicle fusion to target membrane	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0072659 all species →	Biological Process	protein localization to plasma membrane	Interproscan
GO:0098969 all species →	Biological Process	neurotransmitter receptor transport to postsynaptic membrane	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0090729 all species →	Molecular Function	toxin activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0061631 all species →	Molecular Function	ubiquitin conjugating enzyme activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03853	CAPN2; calpain-2	EC:3.4.22.53	Peptidases and inhibitors	ko01002	deepkoala
K06070	PKD; protein kinase D	EC:2.7.11.13	Protein kinases	ko01001	deepkoala
K07885	RAB27A; Ras-related protein Rab-27A	-	GTP-binding proteins	ko04031	deepkoala
K10575	UBE2G1, UBC7; ubiquitin-conjugating enzyme E2 G1	EC:2.3.2.23	Ubiquitin system	ko04121	deepkoala
K15455	DPH3, KTI11; diphthamide biosynthesis protein 3	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.