Gene detail

Detailed information of g2438.t1 in Montipora capitata

Genomic Location: Sc0000037:10288...42434
NR annotation: XP_044174621.1, condensin-2 complex subunit D3-like isoform X3 [Acropora millepora]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2438.t1

atggtgtctggaggctcattagccagcaatggtgtggtagcaagagatgttcaaaccatcaaggatcaagctgttcagtttattaatcacattacacgtaaggacaacaaagacatgctaaatgcagttaaagtgcttattcaacatctctgtacaaactgtcctgaaagagctgaatacaggggcattgtggcgaaggctgtggtcaacatcctggaaaatcttcctgtgaatatgtttgccagccttattgaatggataaacaagtactccaaaaatgttaagataagttacagaatttttgctttggatgttatctcattactcttggctgaaccggaaagacctgtgccagttcatgttgaagagaatgaagcagacaagagcatcaagacactgctcagtaagaagtacctgcttgatgttgtgattgccagatgttctgacagagcaccaacggtccgttccaaggccttgcagtattttgcacaatgtttgacatctgaagacacttccttagtggaaaacgtcaaagcaagtcttaatgaaacagtagaacgaccagcagatggtacacccacctcaaacaggcaaaacattggtcatcaaactgtgtcaaagggcatatgttccatcattaggcagagaacatgtgacgaaaaagttggtgtacggaaagctgccttagaggctttggagagtgttatccgactaagccgggattctttgcaaaaagcggatgtattgaccctccatgaccggtgtatggatccagccctgtcagttaggaaacaagctatgttatctctgacagccctccttcaagaaaaacctgattgtacaatggtccacaggtcaaccaatccacgtcaggtacttgcttgggatctgttggatagaattgccagcccagcaggacaagaagtcaggcgttatcttcactatgcattccaacaatgggcaaaacagaacaggttgtctgcaagtttggttaagtcactcataagtcacgttgacacagagcacagcaaggcagcttggctttgtttagcagaggttggatcttcatctgataaactggatcattcttttgtggtgaaaagttggaatgagtactctcaaggactgaaagattgtgacagtgagacactctgcagaatcctttctgtgcttggtagctcttcccctactcttccctccactgtggttagtatgcttataggtgatcttcatcgaaagttgatttcctttgagtgtccacccgatgtcattgcttctatcatagcaaccctctgcaaggggaacagtgatcaatggtgttcagacttattaaaggcctcagaggaatttctttcccaagttacactgaagcaagactttgtcaatgaggaacttctaaccagacacttatttactgtaggggaggtggcacagcttgcaccaaccaaaactacagaacgactcttcatgtttgtggaatctttgttaatgtcacacaataacaaaaaagatccccttcagatgttgaatctgtcaccaccagtaaaagctcatgcatttgtcacccttggaaaactgtgtcttcagaatgagaaccttgccaagcaatgtgtcgctgctttggccagagaactggaaacctcaaatgatccagcgataaggaataatgtcattattgtcatgtgtgacttgtgtgttaggtacaccagccttgtcgatcgctatgttccaaacattgctgcttgtctaaaagacagtgctcctcttgttaggagacagacacttactcttctgacacacctccttcaggaagattttgtaaagtggaagggcgctctattttaccggtttatcacaacacttgttgataaagacccagagatatggaagtttgtttacaacaagtttcctcagacagatagggaaaagaaactgttttccttaaagggagatcaaaatgccagcaaacggctcaaaatttatcagtttatgctttctcacatgggtgatgaggataggtttaacctcactggaaagctctgtcaagagattcttggtagttttaccgatgctactgttgagctcgatcaagagtcagcggctgtcttaaaagatgctttgctgattttaagtagcaaggtggtgaaaaaaaacatgattgaaaatatcataccaattatcattgagctaaagcatatgcttgagaaaaagcattctccactactcagagacctcatgtcctgcttaaaggaagtgatgaaagattacagatctgaagtccaggatgtgctatctgcagaccggcagttagccaatgagattgagtttgatctaaaaagatttgaggaacaacagaaggaaatagtggaagaacaaaggagaaaacaatccacccctcgggattctctccagatcgcatccacgtcatctcagccatcaggaggcacaccacctgtccaagctgtggagtttgttacaccacagctgcgtggtgcaactccctcacctaaaagtgcttgccatgtctctccactggatggtgctctcagaaaattgcaaattagtcgacggcataccttggcaggcagtgcacaaaaccagattcctctgacaaatggaaagacgtcaaacctccaggttttggtcagtcctcttcaaggcaaaagacgccatactcttgttgctgcagcgatcttgcgttctgcctgcaaaactgtgaaccaagttcaaaatgttactgaacaacgtggaagaagcagaagtaccactcaggtagaagatcctgaggacgatggtgcagcggctatctcagagggacctgaaatacggacaccattgaagccagttaatgttagagtctctcaaaaggaaaatgaagatcgtgcagcaagtacaccagcaggtgaaagaagtcatttgttaaggatttcattttttgagacaaaccgcaatgcagcagtacctccttctccaataccaacatcactgccgattagagtttatccaaaagacaaagctatgcgcacataccttgaagaggtggatgttaagactctgcttgacagtaaaaacacatgcgaggagaaagttgaaatgcttgagacgattgttaagaccgacatggacattctcgcccctaagaaggctaagactatctattctaacgagccaccttggatgaacagcaaattaaagcagctcattgcaaagcgacagagagctgttgctgagggagatttagatcaataccgcgatttgagaaaccgtgtaaatagggaacggaaactgtgtcgtgccaggttttttgagtctacagttgagcaactcaaggagtccaagccagctacttggtggcgagaagttaaaaaacttagcgaaactccaccaagttggatagaaggaagtgacactcaaggaaatggtgtcaatgaagacaaaggaaaggaacaaataatctgtatgatgtcacctgaacaaaagtatgttcaatctggcaaagtatag

Transcript

g2438.t1

ATGGTGTCTGGAGGCTCATTAGCCAGCAATGGTGTGGTAGCAAGAGAtgttcaaaccatcaaggaTCAAGCTGTTCAGTTTATTAATCACATTACACGTAAGGACAACAAAGACATGCTAAATGCAGTTAAAGTGCTTATTCAACATCTCTGTACAAACTGTCCTGAAAGAGCTGAATACAGGGGCATTGTGGCGAAGGCTGTGGTCAACATCCTGGAAAATCTTCCTGTGAATATGTTTGCCAGCCTTATTGAATGGATAAACAAGTACTCCAAAAATGTTAAGATAAGTTACAGAATTTTTGCTTTGGATGTTATCTCATTACTCTTGGCTGAACCGGAAAGACCTGTGCCAGTTCATGTTGAAGAGAATGAAGCAGACAAGAGCATCAAGACACTGCTCAGTAAGAAGTACCTGCTTGATGTTGTGATTGCCAGATGTTCTGACAGAGCACCAACGGTCCGTTCCAAGGCCTTGCAGTATTTTGCACAATGTTTGACATCTGAAGACACTTCCTTAGTGGAAAACGTCAAAGCAAGTCTTAATGAAACAGTAGAACGACCAGCAGATGGTACACCCACCTCAAACAGGCAAAACATTGGTCATCAAACTGTGTCAAAGGGCATATGTTCCATCATTAGGCAGAGAACATGTGACGAAAAAGTTGGTGTACGGAAAGCTGCCTTAGAGGCTTTGGAGAGTGTTATCCGACTAAGCCGGGATTCTTTGCAAAAAGCGGATGTATTGACCCTCCATGACCGGTGTATGGATCCAGCCCTGTCAGTTAGGAAACAAGCTATGTTATCTCTGACAGCCCTCCTTCAAGAAAAACCTGATTGTACAATGGTCCACAGGTCAACCAATCCACGTCAGGTACTTGCTTGGGATCTGTTGGATAGAATTGCCAGCCCAGCAGGACAAGAAGTCAGGCGTTATCTTCACTATGCATTCCAACAATGGGCAAAACAGAACAGGTTGTCTGCAAGTTTGGTTAAGTCACTCATAAGTCACGTTGACACAGAGCACAGCAAGGCAGCTTGGCTTTGTTTAGCAGAGGTTGGATCTTCATCTGATAAACTGGATCATTCTTTTGTGGTGAAAAGTTGGAATGAGTACTCTCAAGGACTGAAAGATTGTGACAGTGAGACACTCTGCAGAATCCTTTCTGTGCTTGGTAGCTCTTCCCCTACTCTTCCCTCCACTGTGGTTAGTATGCTTATAGGTGATCTTCATCGAAAGTTGATTTCCTTTGAGTGTCCACCCGATGTCATTGCTTCTATCATAGCAACCCTCTGCAAGgggAACAGTGATCAATGGTGTTCAGACTTATTAAAGGCCTCAGAGGAATTTCTTTCCCAAGTTACACTGAAGCAAGACTTTGTCAATGAGGAACTTCTAACCAGACACTTATTTACTGTAGGGGAGGTGGCACAGCTTGCACCAACCAAAACTACAGAACGACTCTTCATGTTTGTGGAATCTTTGTTAATGTCACACAATAACAAAAAAGATCCCCTTCAGATGTTGAATCTGTCACCACCAGTAAAAGCTCATGCATTTGTCACCCTTGGAAAACTGTGTCTTCAGAATGAGAACCTTGCCAAGCAATGTGTCGCTGCTTTGGCCAGAGAACTGGAAACCTCAAATGATCCAGCGATAAGGAATAATGTCATTATTGTCATGTGTGACTTGTGTGTTAGgTACACCAGCCTTGTCGATCGCTATGTTCCAAACATTGCTGCTTGTCTAAAAGACAGTGCTCCTCTTGTTAGGAGACAGACACTTACTCTTCTGACACACCTCCTTCAGGAAGATTTTGTAAAGTGGAAGGGCGCTCTATTTTACCGGTTTATCACAACACTTGTTGATAAAGACCCAGAGATATGGAAGTTTGTTTACAACAAGTTTCCTCAGACAGATAGGGAAAAGAAACTGTTTTCCTTAAAGGGAGATCAAAATGccagCAAACGGCTCAAAATTTATCAGTTTATGCTTTCTCACATGGGTGATGAGGATAGGTTTAACCTCACTGGAAAGCTCTGTCAAGAGATTCTTGGTAGTTTTACCGATGCTACTGTTGAGCTCGATCAAGAGTCAGCGGCTGTCTTAAAAGATGCTTTGCTGATTTTAAGTAGCAAGGTGGTGAAAAAAAACATGATTGAAAATATCATACCAATTATCATTGAGCTAAAGCATATGCTTGAGAAAAAGCATTCTCCACTACTCAGAGACCTCATGTCCTGCTTAAAGGAAGTGATGAAAGATTACAGATCTGAAGTCCAGGATGTGCTATCTGCAGACCGGCAGTTAGCCAATGAGATTGAGTTTGATCTAAAAAGATTTGAGGAACAACAGAAGGAAATAGTGGAAGAACAAAGGAGAAAACAATCCACCCCTCGGGATTCTCTCCAGATCGCATCCACGTCATCTCAGCCATCAGGAGGCACACCACCTGTCCAAGCTGTGGAGTTTGTTACACCACAGCTGCGTGGTGCAACTCCCTCACCTAAAAGTGCTTGCCATGTCTCTCCACTGGATGGTGCTCTCAGAAAATTGCAAATTAGTCGACGGCATACCTTGGCAGGCAGTGCACAAAACCAGATTCCTCTGACAAATGGAAAGACGTCAAACCTCCAGGTTTTGGTCAGTCCTCTTCAAGGCAAAAGACGCCATACTCTTGTTGCTGCAGCGATCTTGCGTTCTGCCTGCAAAACTGTGAACCAAGTTCAAAATGTTACTGAACAACGTGGAAGAAGCAGAAGTACCACTCAGGTAGAAGATCCTGAGGACGATGGTGCAGCGGCTATCTCAGAGGGACCTGAAATACGGACACCATTGAAGCCAGTTAATGTTAGAGTCTCTCAAAAGGAAAATGAAGATCGTGCAGCAAGTACACCAGCAGgtgaaaGAAGTCATTTGTTAAGGATTTCATTTTTTGAGACAAACCGCAATGCAGCAGTACCTCCTTCTCCAATACCAACATCACTGCCGATTAGAGTTTATCCAAAAGACAAAGCTATGCGCACATACCTTGAAGAGGTGGATGTTAAGACTCTGCTTGACAGTAAAAACACATGCGAGGAGAAAGTTGAAATGCTTGAGACGATTGTTAAGACCGACATGGACATTCTCGCCCCTAAGAAGGCTAAGACTATCTATTCTAACGAGCCACCTTGGATGAACAGCAAATTAAAGCAGCTCATTGCAAAGCGACAGAGAGCTGTTGCTGAGGGAGATTTAGATCAATACCGCGATTTGAGAAACCGTGTAAATAGGGAACGGAAACTGTGTCGTGCCAGGTTTTTTGAGTCTACAGTTGAGCAACTCAAGGAGTCCAAGCCAGCTACTTGGTGGCGAGAAGTTAAAAAACTTAGCGaAACTCCACCAAGTTGGATAGAAGGAAGTGACACTCAAGGAAATGGTGTCAATgaagacaaaggaaaggaaCAAATAATCTGTATGATGTCACCTGAACAAAAGTATGTTCAATCTGGCAAAGTATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GN08	Condensin-2 complex subunit D3-L OS=Xenopus laevis OX=8355 GN=ncapd3.L PE=1 SV=1
Q6ZQK0	Condensin-2 complex subunit D3 OS=Mus musculus OX=10090 GN=Ncapd3 PE=1 SV=3
P42695	Condensin-2 complex subunit D3 OS=Homo sapiens OX=9606 GN=NCAPD3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001997 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12765 all species →	Cohesin_HEAT	HEAT repeat associated with sister chromatid cohesion	Repeat	Interproscan
PF12717 all species →	Cnd1	non-SMC mitotic condensation complex subunit 1	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026003 all species →	Repeat	HEAT repeat associated with sister chromatid cohesion protein	Interproscan
IPR032682 all species →	Domain	Condensin complex subunit 1, C-terminal	Interproscan
IPR026971 all species →	Family	Condensin subunit 1/Condensin-2 complex subunit D3	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14222 all species →	CONDENSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000779 all species →	Cellular Component	condensed chromosome, centromeric region	Interproscan
GO:0000799 all species →	Cellular Component	condensin complex	Interproscan
GO:0007076 all species →	Biological Process	mitotic chromosome condensation	Interproscan
GO:0010032 all species →	Biological Process	meiotic chromosome condensation	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11491	NCAPD3; condensin-2 complex subunit D3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.