Gene detail

Detailed information of g246.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: WP_170956090.1, sugar ABC transporter substrate-binding protein [Cohaesibacter gelatinilyticus]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q9F9B2	Fructose import binding protein FrcB OS=Rhizobium meliloti OX=382 GN=frcB PE=1 SV=1
Q9F9B0	Fructose import ATP-binding protein FrcA OS=Rhizobium meliloti OX=382 GN=frcA PE=1 SV=1
P0DTT6	Xylose/arabinose import ATP-binding protein XylG OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) OX=330779 GN=xylG PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12894	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF13202	EF-hand_5	EF hand	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF17391	Urocanase_N	Urocanase N-terminal domain	Domain	Interproscan
PF01175	Urocanase	Urocanase Rossmann-like domain	Domain	Interproscan
PF01557	FAA_hydrolase	Fumarylacetoacetate (FAA) hydrolase family	Family	Interproscan
PF15254	CCDC14	Coiled-coil domain-containing protein 14	Coiled-coil	Interproscan
PF00215	OMPdecase	Orotidine 5'-phosphate decarboxylase / HUMPS family	Domain	Interproscan
PF13407	Peripla_BP_4	Periplasmic binding protein domain	Family	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF04857	CAF1	CAF1 family ribonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052779	Family	Cerebral cortical development WD repeat-containing protein	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR024977	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR028846	Family	Recoverin family	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR036190	Homologous_superfamily	Urocanase superfamily	Interproscan
IPR023637	Family	Urocanase	Interproscan
IPR035400	Domain	Urocanase, N-terminal domain	Interproscan
IPR035085	Domain	Urocanase, Rossmann-like domain	Interproscan
IPR038364	Homologous_superfamily	Urocanase, central domain superfamily	Interproscan
IPR036663	Homologous_superfamily	Fumarylacetoacetase-like, C-terminal domain superfamily	Interproscan
IPR011234	Domain	Fumarylacetoacetase-like, C-terminal	Interproscan
IPR029343	Family	Coiled-coil domain-containing protein 14	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR001754	Domain	Orotidine 5'-phosphate decarboxylase domain	Interproscan
IPR011060	Homologous_superfamily	Ribulose-phosphate binding barrel	Interproscan
IPR014732	Family	Orotidine 5'-phosphate decarboxylase	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR028082	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR025997	Domain	Periplasmic binding protein	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050107	Family	ABC transporter carbohydrate import ATP-binding proteins	Interproscan
IPR006941	Family	Ribonuclease CAF1	Interproscan
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR051181	Family	CAF1 family poly(A)-specific ribonucleases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45589	WD REPEAT DOMAIN 62, ISOFORM G	Interproscan
PTHR23055	CALCIUM BINDING PROTEINS	Interproscan
PTHR12216	UROCANATE HYDRATASE	Interproscan
PTHR11820	ACYLPYRUVASE	Interproscan
PTHR22367	COILED-COIL DOMAIN-CONTAINING PROTEIN 14	Interproscan
PTHR32119	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE	Interproscan
PTHR43790	CARBOHYDRATE TRANSPORT ATP-BINDING PROTEIN MG119-RELATED	Interproscan
PTHR15092	POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0006548	Biological Process	L-histidine catabolic process	Interproscan
GO:0016153	Molecular Function	urocanate hydratase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0018773	Molecular Function	acetylpyruvate hydrolase activity	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0034451	Cellular Component	centriolar satellite	Interproscan
GO:0071539	Biological Process	protein localization to centrosome	Interproscan
GO:0004590	Molecular Function	orotidine-5'-phosphate decarboxylase activity	Interproscan
GO:0006207	Biological Process	'de novo' pyrimidine nucleobase biosynthetic process	Interproscan
GO:0044205	Biological Process	'de novo' UMP biosynthetic process	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000175	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0015030	Cellular Component	Cajal body	Interproscan
GO:0017069	Molecular Function	snRNA binding	Interproscan
GO:0034472	Biological Process	snRNA 3'-end processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01557	FAHD1; acylpyruvate hydrolase	EC:3.7.1.5	Transporters	ko02000	deepkoala
			Chromosome and associated proteins	ko03036	deepkoala
			Spliceosome	ko03041	deepkoala
			Pyrimidine metabolism	ko00240	deepkoala
			Tyrosine metabolism	ko00350	deepkoala