Gene detail

Detailed information of g24637.t1.1 in Dendrophyllia cribrosa

Genomic Location: :...
NR annotation: CAH3160251.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

g24637.t1

ATGCCGGCTGTAACCCTCGACGAGACGAACGTGACAGAAGGAGGTGGAAAATTGCAATGCCCTCATCTGCGAGAAAAAAGCGAGGATAACCCGCAGAttgaggaaaagaaagaaaaagaaatcaaagaGCAGGCTACTCAATTGAACGAGACAGAAAATAAAGATGGCATTAATCAAACTGGAACAGTCAATTTGCACTTTTTGATTCCTGGGACAAGTGAACCAATTTCTGCTATGttttctcTTCAAGACAATGTGCAAGATCTCCGACAAATCGTCCTTGATCGGCCAGAGAGTTGTTATAGGACCTGTTTCTCACTTCAGATTGATGGAGTGCGACTTGACGATTTTGCAGAACTGCATATGATTGAAGGGCTAAAAGACGAAGCTACAATAAAAGTTGTAGAAGAGCCATATTCAGTGAGAGAAGCGCGTATCCACTTGCGACGAATAAAAGATCTGCTGAGTACGAACTTCCACATTCATGCTTATTCTGCCATGGACCATCTGTCCCTGTCCTTCCTCACTGCAGTGGCTGGGGTTGATGTAGAAGAGGAAGTTGCACGTGTGAAAGGACAGAATGTTGGAACAGTGTCCACTGAAGAATGCCTCCCTCCTGCTCAAGTTTTTGCATCAGAGGAAATGCCATCGCTATTAGAACCACTCTTCCCAGCAAATGCAGAACCAAAGGTTCCGCGGTGCGTGAAGGACCTTTCTCCCAGTGCATGGAATCCCCCACCAGGAGGAAGACGTCTTGCAGGTGACCTGCTTTATCTCAAAGTTGTCACTCTTGAGGATGTTCATGTGAACATCACTGCTTCAACATCTGGATTTTTTATCAACAGAACACATGATGGTGTATTCAACCCTCAACCTCACAGTGAGCCATGCCGTTCCCACACACTTGTAGGACTTCTTAACCAGCTCAGCCCAATGTTTAGGAAAAACTTTGCTCAACTACAGAAGACAAGTTTAAAGAGACACCCACTTGAGGTCATTCCGACTCCTTATCAAGtGTTTCCATGGGTAGTTCCTCAGACAGAACACACAATTGACACCCTAAGGGCAGAAGATGCTGCTGCAGTAAGAATTGGATATGAAGAACACATGCCTGGTCAGctTCGTGATTGGAATGAAGAACTGCAGTCTGCAAGAGAGTTACCAAAAGATACAATGCAGCAGAGACTACTGAGAGACAGAGCAATTTTCAAGATCACAAGTGATTTTGTGGCAGCTGCCACCAGAGGAGCCGTAGCTGTTGTGGATGGAAATGTGATGGCCATTAATCCTGGAGAAGATGAGAAGAAGAGAATGTTCATCTGGAACAACATTTTCTTCAGCTTTGCATTTGACAGCCGAGAGCACTTCCAAGATTTAGGAGGTGATGATGCTGCCTATGCTGCTGCTGGAGGAGATCTCAAAGGAGTGATGGCCTACAACAGATTAGATACACAGGGTCTCTATACTCTCAGTACAGTCATTGTGGATTACAGGGGCTACAGAGTTATTGCTCAATCGATCATCCCAGGAATACTTCAGCGTGAACAGGAGCAGTCTGTTGTTTATGGTTCTGTGGACTCAGGGAAAAACATTTCAAGTCACGAGAAATTCTTGGAGCTGCTTAATAAGGCAGGCAAATCTATCAGAATAAGACCACACAAGGTTATTAATTCCAGTAATGAAGAAGTTGAGCTTTGTTCTTCAGTAGAATGCAAGGGAATCATTGGAGCTGATGGAAGGCACTACATTTTGGATCTCTTTAGAACTTTTCCACCAGATGCTAATTTTCTTGGAGAAAACAAGGAAGCTTCTGATAATGCTGACGATAAAGAGACCAAGTCTATGTTTCCTCGGCCTTATAAACACAAGTTGTGTTGCTTGAGACCTGAACTGATTGAAGGATTCATAGCATTCCGATATGTGCTTTTTCTGAAGCTGGTTGCTATGCATGTATCTGCCGCCAAACAGAAGGAAATGCAGAACAAGAATGATGAAAAACCAGTGGATGAAACAAATGGAGAGCAGTCAGAATGTCCGTACAAAAATCGACTTAAAAATGATGATATAGATGGTAAAGAAAACACAAAGTTAGAAGAAGCTGTAAAAGAAGCCGAGGAAAGTCATGAAAGTACAGAGTCTTCAGCTGGAGTTACTGCAGATGGAAATGACATTTCAGCAGATGCAATCAAGTCAGCTGCCAAAGCCGTTGGATCAATTAATGATGCAGAATTTGATGTCAGATTTAATCCAGACATCTATGCCCCTGGTATAAAGCATGCATCTTCTGAGGAAGCTGCTTTGTCctgtgataagcttctggttcAAGATGTATCTGACTTTTTAGTAGAAACTGTTATAATAAAAATGGTGGAGGATTTTATCAGTTTATCCCAGACACCACTTGATGGCACACAGTTAACAGACATCATGCATAACAGGGGGATCAACATGAGGTACTTGGGAAAGGTGGCGTCTATTTTATCTCTGCGGGGGGATCTAGAACATGTATATgtcatcaataaGAAGAAAAAGAGCAAAAGGAAGCCACTGAAAGCACAAGGAAATGGAGCTTCAACTGTGGCTTGGGCAACCCTTACACCTGACGACTTGTGGAAATTAATTGATGAAGAAACACAAAAGAACTTTGGATTTGAGCTTAATTGCAAAAATAGTGATGAAGCACTTTTGAAGTATTGCATTCACAGAATTTCATTGCTTAGATCTCTCTGTTTAAAAACAGGTGTCCAGATTCTGTTGCGGGAATATGACTTTGAAAGCAGGAAACACCCAACATTCACAGAGGATGACATCATGAATCTATTTCCAGTCGTAAAACACACCAATCCTAAGGCATATGATGCATCAGCCATATTTGAAGCAGCACAAGGCCGTCTTCAAGGAGGTCTGCTTGGAGAAGCCCATGAACTCATGGTAGAATCTCTAAATCTTTTCCATCAAGTGTATGGACCATTGCATGCTGATATAGCTACATGTTACAGGGCCATTGCAAGACTCCATTATTTAGCAGAAGATGCTGTTCAGGCTGTGAGTTATCAGAAAAAAGCTGTGATCGTTTGTGAGAGAGTCTTTGGTGTGGATCACCCCGACACAATCATTGCTTATGTTCATCTTGCACTGTACTGCCACAATGCAGGCTTAGCATCAGTGGCTCTAAAGCTGATGTACCGTGCAAGGTACTTAGCACTGGTGGTGTATGGAGAGGGACATCCTGACATGGCTACATTTGATaGCAACATTGGTCTTATCCTGCATGGGCAGAGGGAGTTCAAGATCTCGGAAAAGTTCCTAGAAAAAGCTCTGGATGTGCAATTGAAgtatCATGGTCCAGAGAGTATCCACACAGCCATGAGTTTCCACCTTGTTGCAAGAGCTAAGGCCTGTGTGAATGATTATCGAGCTGCGCTTACTGCAGAAAAGACTGCCTTCGCCATTTACAGCAGCAAgTTTGGTGAGGCAGACAGCCGTACAAAGGAAAGCTCAGAATACCTGAAACATTGCACCCAACAGGCTGTCCTCATTCAGAAAaaaTTGAATGAAATTGCTGGAAAAGGAACATCCAAAGATGCAGATAATAAAAGAACTTCAGGGgttGCTGCATTGCCCCCTGATGAGGAAAACATATCTCAACTGATGGGCTACTTAACAGGGCTTCAAGGAGTGCGCCCTTCAAGCACATCGCCCATCAAGGATACATCTGCAGAAGTtaataaaagtttacaaaataCAAGTGAAGAAGCGCAAGCCTTGCTTCACAGCAAACAAGCTGAAATCCTGGATGAGATGGACTAA

Transcript

g24637.t1

Protein

Uniprot

Uniprot term	Description
Q0IHW8	Clustered mitochondria protein homolog OS=Xenopus tropicalis OX=8364 GN=cluh PE=2 SV=1
Q5SW19	Clustered mitochondria protein homolog OS=Mus musculus OX=10090 GN=Cluh PE=1 SV=2
Q17N71	Clustered mitochondria protein homolog OS=Aedes aegypti OX=7159 GN=AAEL000794 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12807	eIF3_p135	Translation initiation factor eIF3 subunit 135	Family	Interproscan
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13236	CLU	Clustered mitochondria	Domain	Interproscan
PF15044	CLU_N	Mitochondrial function, CLU-N-term	Family	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027523	Family	CLU domain containing protein	Interproscan
IPR033646	Domain	CLU central domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR023231	Homologous_superfamily	GSKIP domain superfamily	Interproscan
IPR025697	Domain	CLU domain	Interproscan
IPR028275	Domain	Clustered mitochondria protein, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12601	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006996	Biological Process	organelle organization	Interproscan
GO:0048312	Biological Process	intracellular distribution of mitochondria	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03255	TIF31, CLU1; protein TIF31	-	Translation factors	ko03012	deepkoala