Genomic Location: Sc0000037:795996...816697
NR annotation: XP_022790082.1, cleavage and polyadenylation specificity factor subunit 3-like isoform X1 [Stylophora pistillata]
Species abbreviation MCAPI · all data for this species · gene families
| CDS |
| g2478.t1 |
| Transcript |
| g2478.t1 |
| Protein |
| g2478.t1 |
| UniProt accession | Description |
|---|---|
| P79101 | Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus OX=9913 GN=CPSF3 PE=1 SV=1 |
| Q9UKF6 | Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens OX=9606 GN=CPSF3 PE=1 SV=1 |
| Q9QXK7 | Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus OX=10090 GN=Cpsf3 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001366 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10996 all species → | Beta-Casp | Beta-Casp domain | Domain | Interproscan |
| PF07521 all species → | RMMBL | Zn-dependent metallo-hydrolase RNA specificity domain | Motif | Interproscan |
| PF16661 all species → | Lactamase_B_6 | Metallo-beta-lactamase superfamily domain | Domain | Interproscan |
| PF11718 all species → | CPSF73-100_C | Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR022712 all species → | Domain | Beta-Casp domain | Interproscan |
| IPR011108 all species → | Domain | Zn-dependent metallo-hydrolase, RNA specificity domain | Interproscan |
| IPR021718 all species → | Domain | Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term | Interproscan |
| IPR001279 all species → | Domain | Metallo-beta-lactamase | Interproscan |
| IPR050698 all species → | Family | RNA Processing Metallo-Beta-Lactamase Domain-Containing Protein | Interproscan |
| IPR036866 all species → | Homologous_superfamily | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11203 all species → | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0004521 all species → | Molecular Function | RNA endonuclease activity | Interproscan |
| GO:0004534 all species → | Molecular Function | 5'-3' RNA exonuclease activity | Interproscan |
| GO:0005847 all species → | Cellular Component | mRNA cleavage and polyadenylation specificity factor complex | Interproscan |
| GO:0006378 all species → | Biological Process | obsolete mRNA polyadenylation | Interproscan |
| GO:0006398 all species → | Biological Process | mRNA 3'-end processing by stem-loop binding and cleavage | Interproscan |
g2478.t1.
