Gene detail

Detailed information of g24786.t1 in Acropora digitifera

Genomic Location: chr11Alt:28503417...28517588
NR annotation: XP_029205797.2, uncharacterized protein LOC114969627 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g24786.t1

ATGCCTTTAGAAGACAAACTATTTTTCGAGTGCTTTGAGCTGTCCAGAAAGGGCCGGTTCGGGATGTTTCGTCTGCCTTTTGCAGTTTTATTAACAATTTCACAGCTTTTTTGCGGAGATTCTCCCCGCCCTGATCGCATGTACAAGAAAGTTATTGGCAACAAAGATGCCTTGTGTAACGATGGTTCGAGCGCTGTCTACTACATTGGCGTAAGAGATTCCGCCAGATGGGTTATCTTCCTGGAGAGCGGGTCGTACTGTTTAACAAGGAAACAATGCGAGAAACGGTTTGGAAGTAAGGATACGAAAATTCTAATGACATCAAAAGGGATGCCAGAGGTTACCATAGGCAGAGATTTACTGTCCGTAAACAGCCAAGAAAATAAACTATTTCACAGTTATTCTCGCATATTGATCCCATACTGTAGCAGTGACTCGTGGATGGGAACTCAGACTAAATCCCAGTTGCCTGACTCGCCACGCGGGCCTTCCGCTAAGGAGTTTATTTTCAGCGGCAAAATCATTTTTCAGAGCGTCATTCATGAACTTCTGGGCCAGTTTTCCCAAGAAGTGCGCGAGATTGTCTTCGCAGGATCCAGCGCTGGCGCGATCGCAGTCCTGAATCACATGCAGTGGTTTCAAAGCCTTTTATCTTCAAAGAATATTAGCACCAAACTGTCCGCAATTGTCGATGGTGGCTGGTTTATCAACTTCAGAGAAAGTGTCACGTCAAAACTCTCTTCCGAGTTCTTCAATATTTCGAAGCCCATGAGTCGCGCATGCGCTGACTTCTCCAATGGTTACCCATGTTGCTTATCGGCTCCGTGTATGCTTACACAGGGATACTACCCTGCCAACGTTCCAACTTTTTTTGTGTCAAGCATGTTTGATATTTACATCATCGGAGATGTCGTCCTTCAGCACGTAGAAGATCGAACTGCTTTCGTAGAAAGCGGAGGCGGGGATTTAATTACAATGCTTGACCTCTACGGTGGCGCCATGAACCAATCCCTAGCGGTCGTCCGATCTTCCAACGTCAGCTTTTTCGTACCAGCCTGTTTTCAACATACGTTCTTCAGCATGTCCAGTTTAAGAGAGAAAGGTGGAGTACTTCATTACGATAAGATGTTTAGTCAACGCAATGCAGTATTTAGTACTGCCAAAAAACAGCGAAGGTGGCTATCCTTGGCAATACGTCGAGGAAACAGAGCAGTTACGTTACAATCCGCGCTTGTGAAATGGGCACGAAAAAGCCAGCCCGTGAAAATGATTGACACTTGCCTTGGGCCCCTGTGCAATCCCACGTGCCCGGAAAAGTTTATGTTTGTAGATACTGCGGTGCAATGGAGCGAGGGCCTCGTCACGCTGGTAGGATTAGTGTCCCTAGTTCCCACAGTGCTTTGTGTGGCGTTGAGAATAACTTTGTACATCCAGTCCCTTCTTGTAAGCCGGGCTCAAAAGGAGAGCCTTAGAGGACGCAAATCACCTGAGGATAAAATTTGGATTCCAGTTGAACCAGTAAGACTCCATTACTCAACACCAGATCGTTTTCATCACTACTACTCCGAGGTCAGAGGACAGAAGACTGGTACACATACAAACGCAGAACAGAACAAAATGACTTATGACTACACTTCCAAAGGCTTCAGCAACATATTTTATACAACTGCCCGATACTTGCGAGCAGCTTTTGGGGCCAGGAATAAAGTGTATCCCGCGAACGAGACAACTCGTCGATTTTATTCGGAAGACTCCGACGCTTATTCGGAAAATCGGCGAACTATGAATGCTTCTATGGTAGAACTCGGCGTAGAAAGACCGCCCAATTATCAAGATATAAAGGATGAGAGACTTAATATGGCCGATGCAGTTTGCATGAAAGGTGTTGATAAGGCGGACTTGACGTTCAAAGACGGCGAAGTGATTGCTGTTGTCGGGAAAAATGGAGCTGGAAAATCCACATTACTTTATCTTCTTTGTGGCGAATTTGCGTGTGGTTGTGGTCAGGGACACTTGACTGTTAACGGCGTCAAGCAAGAGAAACTGCCAAGTCGCGTTCATAGCTTTGGCGATGCTGCAAATTTGTCGTGGTTTGCTCGTCTTGGAGATCTGACCTTAAGAGAGCATCTTACGCTTTCTGCGTTGATGGCAATGGCTGGAAATTTGAGTAAGATCGTCGAAAGAGTGGAACAGATTATTCGTGAGACGAGACTTCACACAGTCGCTGATCAGGTTGTCAATGGAACGGACAAAATTCATCTCACTGAACTTCAGAAACGTCTTTTCGGCGTAGCGCTGCAACTCGTAACCAGACCTCTTGTCATGCTACTTGATGATCCAACCAAGGGTTTAAATCATGAATCCACCTTAGACTTGCTAGACATCATAAGAAGGATTTCTGACAGAGGACACTTGGTGGTTGCTACTATGGAGTCCATTCCCAAAGAAGCAGCTCGGTGTTTCGATCAGATAGTTTTACTTGACGACAAACAGATAGTTTATAGCGGAAGTCCTACAGCGCTCGCCCAACTTTACAATCAGCTGGCAACGGATTCACCCGACAAGGAAAAGATGCCATTGGAAGAGGTTGTTGGAGGCATTCTTGAAGATAAAAGGATGCTACAACTGATGGTTGATGAACACTCACGCAACACATGTACAGTCACCGAGAAAGTCGCTACAGATCCGTCACGCACAGAGAAAAACACTCCACAAACCAGGGTTAGGGGTGGAGTCCTTGCCAGGCTCTCTGTGATCGACTACAGAGCCTCGTTACCACGCTCCCTTGGGGAGAGGCTGTTTTTGCCGATCGGGTTCACGATGATCGGAATAACAGCAGGGATTGTTTATTGGCAAACAGACACTCCATTGCGCATAATGACGGCCTACTGCGGTTCGTCTATTCCCAGTCTTCTCTTTCTTTGCTCTGTCGTCTTTAACCGAATTACAAGAAGCTTGCAGACGTGTCGACAAGGCTCTGCAGAAATCGTCGGATACTCGTATGAACACGTTATTCAAACATTCACGAGTCTAACCGCTGAATGTGTTTTGCCAGTGCTAATCTGTGCAGCTCTGACGTATTTCATGGTAATGACTTCATATAACTTGCGGCAATTTGTCCTGGTGACCAATATTTCGCTCGTGTTGAATCAGACGTGGATTGCTCTGTACATGCTAGTCACATTCGCCAATCCTAGCAATGCTTGTCATACTGGCTTTATGGTAGCAGCTCTTGCGGGATTTTCCGTGGGATTCGTGGTAACCAAGCATGAAATGCCTTTTGGGTATAATTTTTTGTTCTATGTCAACCCTCAGTACTACGGTTACTCAGCCGTATGTAAGGCCTTGCTGAAAGACACTCGCCTCTATTGTGACTACGAATCGTTTTTCAACTGTGTCAATCAGGATGGAAATGCTGTTTTAGCGAAGTTTGATTTTGAGTCTGTCAATCCCCATGAACATATGTTGATTATGCTAGGTATGACCCTGTTGAGCCTTCTTTTTTCGTGGCTCCTCTGTCACGCAAGATCATCGCGATGA

Transcript

chr11Alt.g24786.t1

ATTGCTAATTGTTTTCGTTGACAATTTAAAACGATTCAATCTTTTGTCTGAGTGTTGTGTTAATTTCCAAGTCGCTTGTCATGTTTACACAGGATCATAATGCCTTTAGAAGACAAACTATTTTTCGAGTGCTTTGAGCTGTCCAGAAAGGGCCGGTTCGGGATGTTTCGTCTGCCTTTTGCAGTTTTATTAACAATTTCACAGCTTTTTTGCGGAGATTCTCCCCGCCCTGATCGCATGTACAAGAAAGTTATTGGCAACAAAGATGCCTTGTGTAACGATGGTTCGAGCGCTGTCTACTACATTGGCGTAAGAGATTCCGCCAGATGGGTTATCTTCCTGGAGAGCGGGTCGTACTGTTTAACAAGGAAACAATGCGAGAAACGGTTTGGAAGTAAGGATACGAAAATTCTAATGACATCAAAAGGGATGCCAGAGGTTACCATAGGCAGAGATTTACTGTCCGTAAACAGCCAAGAAAATAAACTATTTCACAGTTATTCTCGCATATTGATCCCATACTGTAGCAGTGACTCGTGGATGGGAACTCAGACTAAATCCCAGTTGCCTGACTCGCCACGCGGGCCTTCCGCTAAGGAGTTTATTTTCAGCGGCAAAATCATTTTTCAGAGCGTCATTCATGAACTTCTGGGCCAGTTTTCCCAAGAAGTGCGCGAGATTGTCTTCGCAGGATCCAGCGCTGGCGCGATCGCAGTCCTGAATCACATGCAGTGGTTTCAAAGCCTTTTATCTTCAAAGAATATTAGCACCAAACTGTCCGCAATTGTCGATGGTGGCTGGTTTATCAACTTCAGAGAAAGTGTCACGTCAAAACTCTCTTCCGAGTTCTTCAATATTTCGAAGCCCATGAGTCGCGCATGCGCTGACTTCTCCAATGGTTACCCATGTTGCTTATCGGCTCCGTGTATGCTTACACAGGGATACTACCCTGCCAACGTTCCAACTTTTTTTGTGTCAAGCATGTTTGATATTTACATCATCGGAGATGTCGTCCTTCAGCACGTAGAAGATCGAACTGCTTTCGTAGAAAGCGGAGGCGGGGATTTAATTACAATGCTTGACCTCTACGGTGGCGCCATGAACCAATCCCTAGCGGTCGTCCGATCTTCCAACGTCAGCTTTTTCGTACCAGCCTGTTTTCAACATACGTTCTTCAGCATGTCCAGTTTAAGAGAGAAAGGTGGAGTACTTCATTACGATAAGATGTTTAGTCAACGCAATGCAGTATTTAGTACTGCCAAAAAACAGCGAAGGTGGCTATCCTTGGCAATACGTCGAGGAAACAGAGCAGTTACGTTACAATCCGCGCTTGTGAAATGGGCACGAAAAAGCCAGCCCGTGAAAATGATTGACACTTGCCTTGGGCCCCTGTGCAATCCCACGTGCCCGGAAAAGTTTATGTTTGTAGATACTGCGGTGCAATGGAGCGAGGGCCTCGTCACGCTGGTAGGATTAGTGTCCCTAGTTCCCACAGTGCTTTGTGTGGCGTTGAGAATAACTTTGTACATCCAGTCCCTTCTTGTAAGCCGGGCTCAAAAGGAGAGCCTTAGAGGACGCAAATCACCTGAGGATAAAATTTGGATTCCAGTTGAACCAGTAAGACTCCATTACTCAACACCAGATCGTTTTCATCACTACTACTCCGAGGTCAGAGGACAGAAGACTGGTACACATACAAACGCAGAACAGAACAAAATGACTTATGACTACACTTCCAAAGGCTTCAGCAACATATTTTATACAACTGCCCGATACTTGCGAGCAGCTTTTGGGGCCAGGAATAAAGTGTATCCCGCGAACGAGACAACTCGTCGATTTTATTCGGAAGACTCCGACGCTTATTCGGAAAATCGGCGAACTATGAATGCTTCTATGGTAGAACTCGGCGTAGAAAGACCGCCCAATTATCAAGATATAAAGGATGAGAGACTTAATATGGCCGATGCAGTTTGCATGAAAGGTGTTGATAAGGCGGACTTGACGTTCAAAGACGGCGAAGTGATTGCTGTTGTCGGGAAAAATGGAGCTGGAAAATCCACATTACTTTATCTTCTTTGTGGCGAATTTGCGTGTGGTTGTGGTCAGGGACACTTGACTGTTAACGGCGTCAAGCAAGAGAAACTGCCAAGTCGCGTTCATAGCTTTGGCGATGCTGCAAATTTGTCGTGGTTTGCTCGTCTTGGAGATCTGACCTTAAGAGAGCATCTTACGCTTTCTGCGTTGATGGCAATGGCTGGAAATTTGAGTAAGATCGTCGAAAGAGTGGAACAGATTATTCGTGAGACGAGACTTCACACAGTCGCTGATCAGGTTGTCAATGGAACGGACAAAATTCATCTCACTGAACTTCAGAAACGTCTTTTCGGCGTAGCGCTGCAACTCGTAACCAGACCTCTTGTCATGCTACTTGATGATCCAACCAAGGGTTTAAATCATGAATCCACCTTAGACTTGCTAGACATCATAAGAAGGATTTCTGACAGAGGACACTTGGTGGTTGCTACTATGGAGTCCATTCCCAAAGAAGCAGCTCGGTGTTTCGATCAGATAGTTTTACTTGACGACAAACAGATAGTTTATAGCGGAAGTCCTACAGCGCTCGCCCAACTTTACAATCAGCTGGCAACGGATTCACCCGACAAGGAAAAGATGCCATTGGAAGAGGTTGTTGGAGGCATTCTTGAAGATAAAAGGATGCTACAACTGATGGTTGATGAACACTCACGCAACACATGTACAGTCACCGAGAAAGTCGCTACAGATCCGTCACGCACAGAGAAAAACACTCCACAAACCAGGGTTAGGGGTGGAGTCCTTGCCAGGCTCTCTGTGATCGACTACAGAGCCTCGTTACCACGCTCCCTTGGGGAGAGGCTGTTTTTGCCGATCGGGTTCACGATGATCGGAATAACAGCAGGGATTGTTTATTGGCAAACAGACACTCCATTGCGCATAATGACGGCCTACTGCGGTTCGTCTATTCCCAGTCTTCTCTTTCTTTGCTCTGTCGTCTTTAACCGAATTACAAGAAGCTTGCAGACGTGTCGACAAGGCTCTGCAGAAATCGTCGGATACTCGTATGAACACGTTATTCAAACATTCACGAGTCTAACCGCTGAATGTGTTTTGCCAGTGCTAATCTGTGCAGCTCTGACGTATTTCATGGTAATGACTTCATATAACTTGCGGCAATTTGTCCTGGTGACCAATATTTCGCTCGTGTTGAATCAGACGTGGATTGCTCTGTACATGCTAGTCACATTCGCCAATCCTAGCAATGCTTGTCATACTGGCTTTATGGTAGCAGCTCTTGCGGGATTTTCCGTGGGATTCGTGGTAACCAAGCATGAAATGCCTTTTGGGTATAATTTTTTGTTCTATGTCAACCCTCAGTACTACGGTTACTCAGCCGTATGTAAGGCCTTGCTGAAAGACACTCGCCTCTATTGTGACTACGAATCGTTTTTCAACTGTGTCAATCAGGATGGAAATGCTGTTTTAGCGAAGTTTGATTTTGAGTCTGTCAATCCCCATGAACATATGTTGATTATGCTAGGTATGACCCTGTTGAGCCTTCTTTTTTCGTGGCTCCTCTGTCACGCAAGATCATCGCGATGACCTCCGCACAAGAAGAGACAACACAAACCGCCCGCAAGATTTGCTCAAAGGACAATAAACTCTTACAAACAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99PE8	ATP-binding cassette sub-family G member 5 OS=Mus musculus OX=10090 GN=Abcg5 PE=1 SV=1
Q99PE7	ATP-binding cassette sub-family G member 5 OS=Rattus norvegicus OX=10116 GN=Abcg5 PE=1 SV=3
Q7PC82	ABC transporter G family member 42 OS=Arabidopsis thaliana OX=3702 GN=ABCG42 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF03283 all species →	PAE	Pectinacetylesterase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050352 all species →	Family	ATP-binding cassette subfamily G transporters	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR004963 all species →	Family	Pectinacetylesterase/NOTUM	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48041 all species →	ABC TRANSPORTER G FAMILY MEMBER 28	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05680	ABCG4; ATP-binding cassette, subfamily G (WHITE), member 4	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.