Gene detail

Detailed information of g2482.t2 in Acropora digitifera

Genomic Location: chr2Alt:453975...471932
NR annotation: XP_015758627.1, PREDICTED: bromodomain-containing protein 3-like isoform X1 [Acropora digitifera]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g2482.t2

ATGGAAACTCAAGGCCATCCGACAATCCAAAGCTTGCAGAACCCTCTAACAAACCTTATCGAACGGCCCAGCGCAGCTTTACAGACTGGCCTCAGTAATGAACATAACTCTGATGATTCATTGAATGGATTGCGCTCAGAGGCAAGCCCCGAGGGGCTCGGAAAGCGAGTAAGACGTTTATCTCACAAGTACGACGGTTTTGAACAACAAACAGTGCGAGGAATGGCTCAAACTCAATCAACCAGCCAAGAGCCTAAAAGCATTCGAACAACCAACCAACTACAGTATTTGTCAAAAACGATCATGAAGGCAATGTGGCGGCATCCATATTCCTGGCCGTTTCACGACCCTGTGGACGCTGTGAAACTGAATTTACCGGACTATTACACGATTATAAAGAAACCCATGGACATGTCCCAGATAAAGAAGAAACTAGAAAACCACGAGTATACATGTAGTCAGGAGTGCATAGATGATTTTCGGCTCATCTTTAATAATTGCATCACTTACAACAAGCCTGGAGAGGATGTAGTGCTTATGTGCCAAACAATGGAAAAGGTGTTCAATCAGAAACTTGCTACAATGCCCCCTGAGGAGTATGAAATGATTCTTGGGCCGAAAAAGAAAGCTGAAACGGGAGGATCAGCTGCAAAAAGAGCTAAAAGAGGTGGCTCTGCAGCCAAATTGGAGCAAACAACTGTTGCTCCAGACAGTACCCCCATGATGAGCTTGTCATATCCCACTCCACCAGTAGCTGTCACAGCCACAACTGCACTCCCAACTCCAGTGGATGCAACTACTGTGTTACCATCACCGGCTATTTCTGCTGCTCCAGCCTTGCCATCTGCTGTTCAGCCTGCCAAGGTTAAGAAAGGGGTGAAAAGGAAAGCTGACACCACAACTCCTACTACACCTGTTAGTGGAATGGTTGAGCCACCCCTCCCTGTTAAAACAAAGGCAGCAAAGATACCAACTCGTAGGGAGTCGACAAGAACAGTAAAAAAACCAAACCGTGATTTACCTGAAGAGCCTCAAATGGCACGTGGAAAAAAGAAACCCCTCTCTGAGCAGCTGAGATACTGCAGTAACATAATAAAGGAATTGTTTTCAAAGAAACATGCGACATATGCTTGGCCATTTTACAAGCCTGTAGATGCCTCTGCCCTTGGTTTACATGATTATCATGACATAATCAAGCAGCCAATGGATATGGGCACAATAAAGGTTAAAATGGAAGGAAGAGATTACAATTCCTCATCTGAATTTGCTGCTGATGTTCGCCTAATGTTTAGTAATTGCTATAGATACAATCCTCCAGATCATGATGTTGTCAAAATGGCAAGGCAACTACAGGATGTTTTTGAAATGAAGTTTGCCAAAATGCCAGAGGAGCCCGAGCTCCCTGCTGACCCTGTAATAGAAGCTGCTGAACCTGAACTGGAGTCTGCTGCCACACCTCCTTCATCTTCACCTGCATCCGAAGACAATGAGACTGACAGGGCTGAGAAGCTTTCCCAACTTCAACAACAGCTGATATCTGTCCATGAACAACTCAGCAAGTTAACTGGAGAAACTGTTATCGGTCCAAACAACAAACCTAAGAAGAAGGTTGAGAAAAAACCTGCAGCCAAGAAAGAAGTCAAACCAGCTGTGTCATCACAGTCAAAAAGTCAAGCAAAACAGAAGTCGTCAGGAAAAACTCAAACTCCACAAGCTCAACCAAAAGCTGAGAAGTCTGCAAAGAAACAGTCTGCATCCAAACGGTCTGCTAATAGCAAGATTGCCGCCAAGAAGAAGACAATGGAGGTGGATAGCGATGATGAAGAGGATACTGCCAGACCCATGACATATGATGAAAAAAGACAGCTTAGCCTTGATATCAATAAACTTCCAGGAGACAAGTTAGGGAGAGTGGTAAATATCATCCAGTCCAGGGAACCAGGCTTAAGGGATTCTAACCCTGATGAAATTGAAATTGACTTTGAAACTCTTAAACCATCAACCCTGAGGGAACTAGAGAAATACGTTCAGCAGTGCTTGCGAAAAAAAGTAAAACCTCAAACAAAGAAGGCCAAAAATGCAGAAGAAAGGGAAATTGAACAGGCGAAAAAGAAAGAGGAACTTGAACGAAGGCTTCAGGATGTTAGTGGCAAGCTTGGAGGAACAGGGCAAAAGAAAGCAACAAAGAAAGAATCACAACGAGCAGATCACTCTGTAGTAGATGTTGTTGGCAGTGAGCCTAGGCCATCAAGATTAAGCGAAAGCAGCAGTACTAGTGGAAGTGGTTCAAGCAGTAGTTCTGATTCGAGTTCAAGCTCTGGCTCATCTAGTTCAGCAAGCAGCTCTGACTCTGAATCAGGTAGTGAAGAATAG

Transcript

chr2Alt.g2482.t2

TAATTTGGCTCTTACGAGCATGTCTGTAAAAGATGTACTTCTTTTGCCGTAGTCTTTGATAGAAAAGAAAAACGACGCGCGAACTTGAAATTTCGCAATTGCGGTGATTTGCGTGAAAGAAATATTGAATGAGTTCTTTTGGCGCGCTGGTCAAAACACGTGACTATCGAGTATGACGTGTCGAAAAAGATCATTGCTGGGGGTCATTCGAGAATTCAAAAGGGCGGCTTTCGCTCTGTAGCGGGCTGGTGAAACCCGTGAAGGAGGACAGGATTTTTGAGGGATCTGCGGTCGTGCATGGAAACTCAAGGCCATCCGACAATCCAAAGCTTGCAGAACCCTCTAACAAACCTTATCGAACGGCCCAGCGCAGCTTTACAGACTGGCCTCAGTAATGAACATAACTCTGATGATTCATTGAATGGATTGCGCTCAGAGGCAAGCCCCGAGGGGCTCGGAAAGCGAGTAAGACGTTTATCTCACAAGTACGACGGTTTTGAACAACAAACAGTGCGAGGAATGGCTCAAACTCAATCAACCAGCCAAGAGCCTAAAAGCATTCGAACAACCAACCAACTACAGTATTTGTCAAAAACGATCATGAAGGCAATGTGGCGGCATCCATATTCCTGGCCGTTTCACGACCCTGTGGACGCTGTGAAACTGAATTTACCGGACTATTACACGATTATAAAGAAACCCATGGACATGTCCCAGATAAAGAAGAAACTAGAAAACCACGAGTATACATGTAGTCAGGAGTGCATAGATGATTTTCGGCTCATCTTTAATAATTGCATCACTTACAACAAGCCTGGAGAGGATGTAGTGCTTATGTGCCAAACAATGGAAAAGGTGTTCAATCAGAAACTTGCTACAATGCCCCCTGAGGAGTATGAAATGATTCTTGGGCCGAAAAAGAAAGCTGAAACGGGAGGATCAGCTGCAAAAAGAGCTAAAAGAGGTGGCTCTGCAGCCAAATTGGAGCAAACAACTGTTGCTCCAGACAGTACCCCCATGATGAGCTTGTCATATCCCACTCCACCAGTAGCTGTCACAGCCACAACTGCACTCCCAACTCCAGTGGATGCAACTACTGTGTTACCATCACCGGCTATTTCTGCTGCTCCAGCCTTGCCATCTGCTGTTCAGCCTGCCAAGGTTAAGAAAGGGGTGAAAAGGAAAGCTGACACCACAACTCCTACTACACCTGTTAGTGGAATGGTTGAGCCACCCCTCCCTGTTAAAACAAAGGCAGCAAAGATACCAACTCGTAGGGAGTCGACAAGAACAGTAAAAAAACCAAACCGTGATTTACCTGAAGAGCCTCAAATGGCACGTGGAAAAAAGAAACCCCTCTCTGAGCAGCTGAGATACTGCAGTAACATAATAAAGGAATTGTTTTCAAAGAAACATGCGACATATGCTTGGCCATTTTACAAGCCTGTAGATGCCTCTGCCCTTGGTTTACATGATTATCATGACATAATCAAGCAGCCAATGGATATGGGCACAATAAAGGTTAAAATGGAAGGAAGAGATTACAATTCCTCATCTGAATTTGCTGCTGATGTTCGCCTAATGTTTAGTAATTGCTATAGATACAATCCTCCAGATCATGATGTTGTCAAAATGGCAAGGCAACTACAGGATGTTTTTGAAATGAAGTTTGCCAAAATGCCAGAGGAGCCCGAGCTCCCTGCTGACCCTGTAATAGAAGCTGCTGAACCTGAACTGGAGTCTGCTGCCACACCTCCTTCATCTTCACCTGCATCCGAAGACAATGAGACTGACAGGGCTGAGAAGCTTTCCCAACTTCAACAACAGCTGATATCTGTCCATGAACAACTCAGCAAGTTAACTGGAGAAACTGTTATCGGTCCAAACAACAAACCTAAGAAGAAGGTTGAGAAAAAACCTGCAGCCAAGAAAGAAGTCAAACCAGCTGTGTCATCACAGTCAAAAAGTCAAGCAAAACAGAAGTCGTCAGGAAAAACTCAAACTCCACAAGCTCAACCAAAAGCTGAGAAGTCTGCAAAGAAACAGTCTGCATCCAAACGGTCTGCTAATAGCAAGATTGCCGCCAAGAAGAAGACAATGGAGGTGGATAGCGATGATGAAGAGGATACTGCCAGACCCATGACATATGATGAAAAAAGACAGCTTAGCCTTGATATCAATAAACTTCCAGGAGACAAGTTAGGGAGAGTGGTAAATATCATCCAGTCCAGGGAACCAGGCTTAAGGGATTCTAACCCTGATGAAATTGAAATTGACTTTGAAACTCTTAAACCATCAACCCTGAGGGAACTAGAGAAATACGTTCAGCAGTGCTTGCGAAAAAAAGTAAAACCTCAAACAAAGAAGGCCAAAAATGCAGAAGAAAGGGAAATTGAACAGGCGAAAAAGAAAGAGGAACTTGAACGAAGGCTTCAGGATGTTAGTGGCAAGCTTGGAGGAACAGGGCAAAAGAAAGCAACAAAGAAAGAATCACAACGAGCAGATCACTCTGTAGTAGATGTTGTTGGCAGTGAGCCTAGGCCATCAAGATTAAGCGAAAGCAGCAGTACTAGTGGAAGTGGTTCAAGCAGTAGTTCTGATTCGAGTTCAAGCTCTGGCTCATCTAGTTCAGCAAGCAGCTCTGACTCTGAATCAGGTAGTGAAGAATAGACTGACTTGTGGCAACAGCGACAAAACAATGCCTCAAAAACTGGTGTCTTGAATTTCAAGACGTACAGGAAAAAAAATGTGTGTAGGCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5TJG6	Bromodomain-containing protein 2 OS=Canis lupus familiaris OX=9615 GN=BRD2 PE=3 SV=1
Q7JJ13	Bromodomain-containing protein 2 OS=Mus musculus OX=10090 GN=Brd2 PE=1 SV=1
Q6MGA9	Bromodomain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Brd2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF17035 all species →	BET	Bromodomain extra-terminal - transcription regulation	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018359 all species →	Conserved_site	Bromodomain, conserved site	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR043509 all species →	Domain	Brdt, bromodomain, repeat II	Interproscan
IPR050935 all species →	Family	Bromodomain-containing chromatin reader	Interproscan
IPR027353 all species →	Domain	NET domain	Interproscan
IPR043508 all species →	Domain	Brdt, bromodomain, repeat I	Interproscan
IPR038336 all species →	Homologous_superfamily	NET domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22880 all species →	FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0070577 all species →	Molecular Function	lysine-acetylated histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g2482.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.