Gene detail

Detailed information of g24847.t2 in Acropora digitifera

Genomic Location: chr11Alt:29298262...29305445
NR annotation: XP_029196381.2, protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1-like [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr11Alt.g24847.t2

GAATTTCTAGTTTCTAAAGAAACTGTGGTGCTGCGTCGGTGGGAGAGATGAAAACAAAAATTTGGGTTTATCAAACGAGTTGATAAAGGTTGAATTACCACCGTGAAAGATTTAGAAAGCTGACGTTTCGAGCGTTAGCCCTTCGTCAGAGCGAAAGAAACATGGATATAGAGGTTTATTCCAGCAAGGAGAAAGCAGCCATAAAAGTTGACGGTAAAATGGTTTCGGAGGTTATAAAAGAAGGGGTTCGTGGCATCATCGCATTCGTCTTAAATCAGAAGACTGGCGTTCTAATGGCAACGAGAGAGTTTGATACATACGCTTCAAGTGAGGACGGACAAGAGGTTATCAAGTTTGTAGAGTCTTTGAAGGAAGGAAGAATCGTGTGCTTAGCTATTAAGGATGAAGGAACCATGAGCTTGAAAAGCGAGTCTCGTGACCAAATTGTCGAAAAACTAGGCAGTAGTTACATCAGAGATCTCGGATGGCGAGATACCTGGGTTTTAATCTTCAAGCGAACGAACAACTACAAGAAGACAATCGCCGAAAGTCACCAGAAATCTGCCGACTTCAACAGCTGGGCGAAAGGCATTCTGCTCCGAGCATCTATAACTCGAGAACCGGAAGAAACTGACTGCAACTGGGAAGACAACGAGAGCAATCGGAGAAGGATAGAATTCTGCGAGAAATATGAAGGATATGAAGGGGTGTGCCGCTGCCACGACCCAGTGTCAATCGATTTTAATCCTCCGGCTTTGGAAGACGGCAGTCGTATCGACCTTCCAGTGATTGTCATGGCCGGTAATCGTCCCCATTATCTTTACAGAATGCTCAAAACACTGCGGGGAGTCCAAGGGCTTAATCCCTCCATGGTAACAGTGTTTATTGACGGTTTCCTTGACGAGCCCGCTTCTGTTACGCGGGTATTTGGTTTAAGGGCCGATCAACATGCAAGTGTAAGCTCAAAGAACTCTAGGATATGTCAGCACTACAAGAAGTCCATATCGCAAACGTTTGATCAATTTCCTGATGCAAACTACCTGGTGATTATCGAGGAAGATCTCGACGTTTCCGTGGATATCCTCAGCTACTTCAAGCAGCTTCTACCGGTCTTGGAAAACGACGAGAGCGTTTATTGTATATCAGCGTGGAATGATCAGGGATATGAATACACTGCGCATGATGCTTCCATGACCTACAGGATTGAAACAATGCCAGGATTGGGTTGGGTGCTGAGTCGAAAGTTGTACAAAGGTGAACTTGAGGCTAAGTGGCCTGGCCCAGATGTTTTCTGGGATTGGGACATGTGGATGAGAGCAGCTGAGCAGAGAAAAGGTCGAGAGTGCATCATACCTGATATTTCACGAACGTATCACTTCGGCGCCAAAGGCCTCAACGTGGGTCCAGCCATGAACGATGCTTACTTCAAGAGGCATGCATTTAACACTCAACCCAACGTGAAAATGAACCCAGAAGTGATGTATAAGGACAAGTACGAGAAGGAGATTCACAGGCTGATTGGCCAAGCAGAGCTTCTCAACCATTCACAAACGCCTTGTACAAACCCCAAGAACTTTGTTCCTGATACGAAGGACAAGATCTACTTATTCTACATGAGAATGGATCATACTAGAGACTATACAACCTGGATAAACGTGGCAAGATGTTTCAGGATTTGGGACCTGGATGCTCGCGGCTTCCACAAAGGTTTATGGAGAATGTGGGTCAAAGGAAATCATTTGTTATACATAGGATGCCCTATTTCGCCTTACTGCAGTCACAAGCCGGACCATTTACAACCAATTTATATGCCAAATACAGAGACAAGGCCATCGGATGAAAATTTCTTCGCGAGGTGAAAGTAACCAAGGGTTTGTCATGGATTTCATTTGAATATATCAAAGGAGATGGAGCTATTGAAAGAGAATTCCTTAATTCATTGAGAGCTTCAGAATACCGATGGCGCAGAAGATGATTTTGACGATGCTTATAATGAAAAGCGAAAGACAAATCATTACACACTTTAACCAAAAGATACGATTAGAGATACAGGAATTTTTTTCTACTAGGAATCTAGTAGAAAAACTAGATCTCTACTTGGAACCGTACTTTCTCAAAAGGACCAATTTGAATAAAAACTAGCGCTACTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5EAB6	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Bos taurus OX=9913 GN=POMGNT1 PE=2 SV=1
Q8WZA1	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Homo sapiens OX=9606 GN=POMGNT1 PE=1 SV=2
Q5XIN7	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Rattus norvegicus OX=10116 GN=Pomgnt1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15711 all species →	ILEI	Interleukin-like EMT inducer	Domain	Interproscan
PF03071 all species →	GNT-I	GNT-I family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR039477 all species →	Domain	ILEI/PANDER domain	Interproscan
IPR052463 all species →	Family	O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase	Interproscan
IPR004139 all species →	Family	Glycosyl transferase, family 13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46396 all species →	PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016266 all species →	Biological Process	O-glycan processing	Interproscan
GO:0030173 all species →	Cellular Component	obsolete integral component of Golgi membrane	Interproscan
GO:0047223 all species →	Molecular Function	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity	Interproscan
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0008375 all species →	Molecular Function	acetylglucosaminyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09666	POMGNT1; beta-1,2-N-acetylglucosaminyltransferase	EC:2.4.1.-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.