Gene detail

Detailed information of g2485.t1 in Tripedalia maipoensis

Genomic Location: scaffold_12:844006...844434
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001390 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02966 all species →	DIM1	Mitosis protein DIM1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004123 all species →	Family	Dim1 family	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12052 all species →	THIOREDOXIN-LIKE PROTEN 4A, 4B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0046540 all species →	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0005682 all species →	Cellular Component	U5 snRNP	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12859	TXNL4A, DIB1; U5 snRNP protein, DIM1 family	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.