Gene detail

Detailed information of g24896.t2 in Acropora digitifera

Genomic Location: chr11Alt:29931569...29947093
NR annotation: XP_015768858.1, PREDICTED: histone-lysine N-methyltransferase SETD2-like, partial [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g24896.t2

ATGATTTTGGTAGACATCACAATTTCTTTAGGTTATCTAAGTATTAAGGCTCAGAGGCAACTTGCTTTGTTTAAAAATAGGTTGAATAACCCACGGGAAAGAGCAAAGCAGATCGGTAAAGGGTTTTATTTTGTTCAGAAGTCTAGCAGTGAAGATGAGGTATTGGATGAACATGTGATATCATCAACTGAGGAGTACCAGCCCCCTTATTACGAACATGTTGAGGAGAATGAATATCTGTTTGACAGGAAAACGAGGGTCAACAAGGAAGTTCGCAAGATGCAATGTGAATGCATATATGAAGCAGATCAAGATGGTTTTGTTGGATGTGGAGAAAACTGCCTCAATAGGCTGCTAATGATTGAATGTAACAGCAGATGTAAATGTGGGGCTGCTTGTAGCAATAAAAGATTCCAACAGGGCTGCAAAGTAAAAGTTGAAGTTCTGAAGACAGAAAAGAAAGGATGGGGATTGAGAACCCTTGAAGATCTTGAACCAAATCAATTTGTGATGGAATACTGTGGAGAAGTAATGGATTACAGAGACTTCCAAGACAGGGCAGAGCAGTATGATAGAGAAAACAGACGACACTATTACTTCATGACACTCAGGGCTGACGAGATCATAGATGCTACTTTCAAGGGGAATCTCTCTCGTTTTATCAACCATAGCTGTGATCCAAATTGTGAGACTCAAAAGTGGACAGTAAATGGCTTGCTAAGAATTGGCTTCTTTACTCTAAAGCATATAACTGCTGGAGAGGAACTCACATTTGACTATAAACTTCAGCGTTATGGCAAAGTTGCTCAGGTGTGTCATTGCGAGGGTCTCAACTGTCGTGGGTTTATTGGCGGTGAAAAGCAGACTCCACTCAAGAATACTATAGAAAGAATAGCTACTCCACCTACTAGTTCTCCTAGAAGAAGACAGCGCAAAAAGAGGAACTTAACAGATGACTTTGATGACATCACTCTTGAAGATGAAGTTGAGAAACTCTTAGGTGATAACAGAGGACTGGTACAAAGTGACCAAGCCTTGAAGCTGTCACGATTGATGGTTCGGGCAGAAACCACTGAACAGAGAATCATGCTTCTTAAAATACTGCAGCATACCACTGACCAGTCATGTTTGAAAGCTTTTCTGAGGTACCAAGGTTTGTCACTTTTGTGGAGTTGGATGGTTGATGGAGGAGGAAAGAAAGCAAAGCTACAAAAACAGTTACTTGAAACCTTGAAATGTCTACCGATTGCCACAAAAAACCAACTGGAGGACAGCAAAGTGATCAAGGTGGTGCGAAAATGGGCATTATCATCATGCCACTTATTAGGAACTGGCATCAACATTGTACCAGACAATGATAGTCCAACAGATTCAGAATGTACTGCCGGACTAGAAGATGAAGATGAAAAGGAGAAGAAATTAACCAGCAGTCCGTTTTTTGGGCGCCAAAGTTCTAACAAAGATCAATCTGACGATGAGTCCTTGGATGCTGAAGTTGAAAGCTTCAATGTTGATAAGATTCAACAATTGGTTAAGACCAAAATGGTCCATGAGAATTTAGAAAAATCTCCAGATGATCTTTCTGAAGATGATTTAAAATCAGAGGAGGATCGACTGCCGACAGATGAAGTAGGAGTGATGTCCAATGAATTGCTGAAGTCTTGGAGTATGCTCAAAGAAGTGTATCGGATACCAAAGAAGTCTGCTACACCGGCTAAACAAGACAGGATTCTTGAGCTCTCATCAGCATCTAGCCCTGCAGGGAGCATTGAAGGGGAGTGCACTCGGATACCATATGAACAGATATCTTCCCCAGGGAGGCTGGATGCTATCATAAAAACTCTGCATAATTCTCCTAGAGCTCTTTTTCCTGCGGAGTCCAGGCCTTCACCAGTCTCTCAGGGCTTTTCCACCTGTAGTGAAAATACCCTTGATGAAAAAGACCGCAATGATGAAGCAGTGAAGCCAAAACCAGCTGATTTTAGTTCTTTAGAGTTTGGAGAAGTTACAGAGAGCAAAGAGAGTTCAACTTCAATTGAACAAGAAGAGATTCATTCAGCTCCTCCAGCAGCAGAATTTGATGACACCAAATCTCCAAGTTCTTTGCCAACCTTTGGTTACCAACAACGAATGAACTTTAACGTGTATCAGGGTTTTAATTCTTTGCAACAAAAACCAAAAGGTAACAAAAAGAAAAAGAAAAAATGGAGTCAAAATCAAAATTTTTGCCAGCAACCAGAAAGGAATGTTCAAGGATCAGGAAATTACACAAACACAAACTTGCAACCCAACTTTGGTCAACAGCAAGGCATGGCCCCCTGGAGAGGCTCGTCTCAGTGCATCCAAAATGTTCCACAAAGCTTCCAGGGAAACCAAGTGTATTGTGGTGGGCCCTTGGGACTAGTTCAGGGTCCAGGCCCTCAAAATATGGTACCAGGAAATCCTGCTGGAAATATATCCCAGCAAGCATCGTCATTTCCTAATTTTAGTGTACCTCCTCCTAACATACCGCCATTGGAATTCTTCCGTAAAATCCCCCCTCCAAACTTTCCACCTCAAAGCCAGCCAGTGGTGATACCCCAATTACCACAAAATCCACTCATACCTCAGCAAACTGTGCCTCTGCCCCATCTTCAGCCAAATCAGCCAACATTCTTCCCAGCTAATCAACAAGCTCCTTACAATAGACTTCCTCCCCCTCCCCCACCTTTCCAGGCAAGTCTTCCTGTGCAGCCTTCATCACAGTTTCCACAGAACAGCAGCATGCCTCAGCTTCCACAGGGTACCCAGAGTGGCTTTCCTTCGCAACAAAATCAATTTCCAGCTTTAAGCTCATCTTCAGTATCCCATGTTGGGTTAATTCCTGTAAAACAAGTAAGCCCCCAGGAAGAAGTCTCCTTGATGACACAGCGTCAAAGTAGTACGCCAGAGGCCACATCAGCTTCAGAGGTTGAATCCCTCGCCTTACAGACTGGAGCTGTCACCACATCCTCGCTAGAAACATACGAGTCGAGAGGTGAACCAGAGCACCATACTCCTCTACGTGTAAAACGTAACCCTACACATCTGCCACCGCACTGGAAGTCAGCAACTGACCCACAAGGGAAAGTTTACTACTATCATACACAGACACGGGAAACCCAATGGGAGTTACCCAGATGGGAAACCAGTCCATCATCAGAGGAAGAACCAGTCACAGTAGTTGATGGGACAAACTTTATAGGTCACAGCTACCCCAGTGCTGAAGAGGTGTCTTCACCAAAAGCAAAAGTAAGGAAGACTGCCAAGATTCCCAGCACTCCCCCAGGGACTCCCCCTGAAAGCCCAACTCTTGCCTACACCACAGCTGCCGCTGATACCACTGCGCATAAAAGAGATGATGAGCATGTTATTGGAGACAGCTCATCCTCTGACCCAACATCCCATTTTAACAAGATAAAAGAAATGTTCAGAATGAAGCTCTCCAATGTTGTGGTAAACTGTCTGAACCCATTCTTCAAAGTCGACTGTAAAGCAGGAAGGATCCTAAATACAGAAGATTTTAAATACTTGGCTAGGAAGGAACGGCAGTGTTATCCATCACTTTTAAACAACCAAGTTGACTATGAGATGTGTGGCCTTGTGTCAAGTGAAACGGGAAGAGTTAACCCATGGAATTTTGATGAAAGAGCTGAGTCACCTTAA

Transcript

chr11Alt.g24896.t2

CTGCGCGACAGTCTGATTCGCCCTCTAATCTTTCTCTTCGCCGGTTCTTATTGTTCCCCGGAAGGAAACAGACCATTATACACTGACCTGTTATTTTTGGCACAAATCACGTTTTTCCTGTGTCTCGCAACAATGTGTTTCCCAATTGATCTCACGCGAGGTTCTTGGCAGAAATCGGCTGAAAAAGATCTGAATTAGGCTTTGAGGGTTTTTTTTATTTTATGCAAGACTTCTTTTGGAGGAATATCTGAAAGTTTCAGAGGATGCTTAATTGGTGATTATTTTCTCTGTTTATTATTCATGGCAAATGTAATTAATTTCCTTTTCACAATACAGTTCAAAGTATCAAATATTTGGTGTAGAGTGCTCAGTATCAATAATTAGTGTTAAATCCATGTAAATATTTCTCAATTACAGAAAATCAACTTGTGCCAAATCAACTTTTTTTTAGTGTACAACATCAAATTTTGCTGTTGCCATAGGAGACCATTGTGGGAATGATTTTGGTAGACATCACAATTTCTTTAGGTTATCTAAGTATTAAGGCTCAGAGGCAACTTGCTTTGTTTAAAAATAGGTTGAATAACCCACGGGAAAGAGCAAAGCAGATCGGTAAAGGGTTTTATTTTGTTCAGAAGTCTAGCAGTGAAGATGAGGTATTGGATGAACATGTGATATCATCAACTGAGGAGTACCAGCCCCCTTATTACGAACATGTTGAGGAGAATGAATATCTGTTTGACAGGAAAACGAGGGTCAACAAGGAAGTTCGCAAGATGCAATGTGAATGCATATATGAAGCAGATCAAGATGGTTTTGTTGGATGTGGAGAAAACTGCCTCAATAGGCTGCTAATGATTGAATGTAACAGCAGATGTAAATGTGGGGCTGCTTGTAGCAATAAAAGATTCCAACAGGGCTGCAAAGTAAAAGTTGAAGTTCTGAAGACAGAAAAGAAAGGATGGGGATTGAGAACCCTTGAAGATCTTGAACCAAATCAATTTGTGATGGAATACTGTGGAGAAGTAATGGATTACAGAGACTTCCAAGACAGGGCAGAGCAGTATGATAGAGAAAACAGACGACACTATTACTTCATGACACTCAGGGCTGACGAGATCATAGATGCTACTTTCAAGGGGAATCTCTCTCGTTTTATCAACCATAGCTGTGATCCAAATTGTGAGACTCAAAAGTGGACAGTAAATGGCTTGCTAAGAATTGGCTTCTTTACTCTAAAGCATATAACTGCTGGAGAGGAACTCACATTTGACTATAAACTTCAGCGTTATGGCAAAGTTGCTCAGGTGTGTCATTGCGAGGGTCTCAACTGTCGTGGGTTTATTGGCGGTGAAAAGCAGACTCCACTCAAGAATACTATAGAAAGAATAGCTACTCCACCTACTAGTTCTCCTAGAAGAAGACAGCGCAAAAAGAGGAACTTAACAGATGACTTTGATGACATCACTCTTGAAGATGAAGTTGAGAAACTCTTAGGTGATAACAGAGGACTGGTACAAAGTGACCAAGCCTTGAAGCTGTCACGATTGATGGTTCGGGCAGAAACCACTGAACAGAGAATCATGCTTCTTAAAATACTGCAGCATACCACTGACCAGTCATGTTTGAAAGCTTTTCTGAGGTACCAAGGTTTGTCACTTTTGTGGAGTTGGATGGTTGATGGAGGAGGAAAGAAAGCAAAGCTACAAAAACAGTTACTTGAAACCTTGAAATGTCTACCGATTGCCACAAAAAACCAACTGGAGGACAGCAAAGTGATCAAGGTGGTGCGAAAATGGGCATTATCATCATGCCACTTATTAGGAACTGGCATCAACATTGTACCAGACAATGATAGTCCAACAGATTCAGAATGTACTGCCGGACTAGAAGATGAAGATGAAAAGGAGAAGAAATTAACCAGCAGTCCGTTTTTTGGGCGCCAAAGTTCTAACAAAGATCAATCTGACGATGAGTCCTTGGATGCTGAAGTTGAAAGCTTCAATGTTGATAAGATTCAACAATTGGTTAAGACCAAAATGGTCCATGAGAATTTAGAAAAATCTCCAGATGATCTTTCTGAAGATGATTTAAAATCAGAGGAGGATCGACTGCCGACAGATGAAGTAGGAGTGATGTCCAATGAATTGCTGAAGTCTTGGAGTATGCTCAAAGAAGTGTATCGGATACCAAAGAAGTCTGCTACACCGGCTAAACAAGACAGGATTCTTGAGCTCTCATCAGCATCTAGCCCTGCAGGGAGCATTGAAGGGGAGTGCACTCGGATACCATATGAACAGATATCTTCCCCAGGGAGGCTGGATGCTATCATAAAAACTCTGCATAATTCTCCTAGAGCTCTTTTTCCTGCGGAGTCCAGGCCTTCACCAGTCTCTCAGGGCTTTTCCACCTGTAGTGAAAATACCCTTGATGAAAAAGACCGCAATGATGAAGCAGTGAAGCCAAAACCAGCTGATTTTAGTTCTTTAGAGTTTGGAGAAGTTACAGAGAGCAAAGAGAGTTCAACTTCAATTGAACAAGAAGAGATTCATTCAGCTCCTCCAGCAGCAGAATTTGATGACACCAAATCTCCAAGTTCTTTGCCAACCTTTGGTTACCAACAACGAATGAACTTTAACGTGTATCAGGGTTTTAATTCTTTGCAACAAAAACCAAAAGGTAACAAAAAGAAAAAGAAAAAATGGAGTCAAAATCAAAATTTTTGCCAGCAACCAGAAAGGAATGTTCAAGGATCAGGAAATTACACAAACACAAACTTGCAACCCAACTTTGGTCAACAGCAAGGCATGGCCCCCTGGAGAGGCTCGTCTCAGTGCATCCAAAATGTTCCACAAAGCTTCCAGGGAAACCAAGTGTATTGTGGTGGGCCCTTGGGACTAGTTCAGGGTCCAGGCCCTCAAAATATGGTACCAGGAAATCCTGCTGGAAATATATCCCAGCAAGCATCGTCATTTCCTAATTTTAGTGTACCTCCTCCTAACATACCGCCATTGGAATTCTTCCGTAAAATCCCCCCTCCAAACTTTCCACCTCAAAGCCAGCCAGTGGTGATACCCCAATTACCACAAAATCCACTCATACCTCAGCAAACTGTGCCTCTGCCCCATCTTCAGCCAAATCAGCCAACATTCTTCCCAGCTAATCAACAAGCTCCTTACAATAGACTTCCTCCCCCTCCCCCACCTTTCCAGGCAAGTCTTCCTGTGCAGCCTTCATCACAGTTTCCACAGAACAGCAGCATGCCTCAGCTTCCACAGGGTACCCAGAGTGGCTTTCCTTCGCAACAAAATCAATTTCCAGCTTTAAGCTCATCTTCAGTATCCCATGTTGGGTTAATTCCTGTAAAACAAGTAAGCCCCCAGGAAGAAGTCTCCTTGATGACACAGCGTCAAAGTAGTACGCCAGAGGCCACATCAGCTTCAGAGGTTGAATCCCTCGCCTTACAGACTGGAGCTGTCACCACATCCTCGCTAGAAACATACGAGTCGAGAGGTGAACCAGAGCACCATACTCCTCTACGTGTAAAACGTAACCCTACACATCTGCCACCGCACTGGAAGTCAGCAACTGACCCACAAGGGAAAGTTTACTACTATCATACACAGACACGGGAAACCCAATGGGAGTTACCCAGATGGGAAACCAGTCCATCATCAGAGGAAGAACCAGTCACAGTAGTTGATGGGACAAACTTTATAGGTCACAGCTACCCCAGTGCTGAAGAGGTGTCTTCACCAAAAGCAAAAGTAAGGAAGACTGCCAAGATTCCCAGCACTCCCCCAGGGACTCCCCCTGAAAGCCCAACTCTTGCCTACACCACAGCTGCCGCTGATACCACTGCGCATAAAAGAGATGATGAGCATGTTATTGGAGACAGCTCATCCTCTGACCCAACATCCCATTTTAACAAGATAAAAGAAATGTTCAGAATGAAGCTCTCCAATGTTGTGGTAAACTGTCTGAACCCATTCTTCAAAGTCGACTGTAAAGCAGGAAGGATCCTAAATACAGAAGATTTTAAATACTTGGCTAGGAAGGAACGGCAGTGTTATCCATCACTTTTAAACAACCAAGTTGACTATGAGATGTGTGGCCTTGTGTCAAGTGAAACGGGAAGAGTTAACCCATGGAATTTTGATGAAAGAGCTGAGTCACCTTAAAAGTGAAGAGACACTGCAGTGTAATGACTCTGTAAAAATCAAGACAAAGGAATACATTCGAACATATATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E9Q5F9	Histone-lysine N-methyltransferase SETD2 OS=Mus musculus OX=10090 GN=Setd2 PE=1 SV=1
Q9BYW2	Histone-lysine N-methyltransferase SETD2 OS=Homo sapiens OX=9606 GN=SETD2 PE=1 SV=3
Q9VYD1	Histone-lysine N-methyltransferase Set2 OS=Drosophila melanogaster OX=7227 GN=Set2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00856 all species →	SET	SET domain	Family	Interproscan
PF17907 all species →	AWS	AWS domain	Domain	Interproscan
PF00397 all species →	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001214 all species →	Domain	SET domain	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR006560 all species →	Domain	AWS domain	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR003616 all species →	Domain	Post-SET domain	Interproscan
IPR035441 all species →	Homologous_superfamily	TFIIS/LEDGF domain superfamily	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR042294 all species →	Family	Histone-lysine N-methyltransferase SETD2, animal	Interproscan
IPR044437 all species →	Domain	SETD2/Set2, SET domain	Interproscan
IPR038190 all species →	Homologous_superfamily	Set2 Rpb1 interacting domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46711 all species →	HISTONE-LYSINE N-METHYLTRANSFERASE SETD2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042054 all species →	Molecular Function	histone methyltransferase activity	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0016279 all species →	Molecular Function	protein-lysine N-methyltransferase activity	Interproscan
GO:0046975 all species →	Molecular Function	histone H3K36 methyltransferase activity	Interproscan
GO:0097198 all species →	Biological Process	obsolete histone H3-K36 trimethylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g24896.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g24896.t2 across 39 RNA-seq samples of Acropora digitifera. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.