Gene detail

Detailed information of g250.t1 in Acropora digitifera

Genomic Location: chr1Alt:3750797...3755998
NR annotation: XP_015756623.1, PREDICTED: zinc finger protein 2-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04814 all species →	HNF-1_N	Hepatocyte nuclear factor 1 (HNF-1), N terminus	Family	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF13465 all species →	zf-H2C2_2	Zinc-finger double domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR006899 all species →	Domain	Hepatocyte nuclear factor 1, N-terminal	Interproscan
IPR010982 all species →	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR044869 all species →	Domain	HNF-1, POU-specific (POUs) atypical domain	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR027756 all species →	Family	Ovo-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10032 all species →	ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009913 all species →	Biological Process	epidermal cell differentiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g250.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.