Gene detail

Detailed information of g250.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MCH7794148.1, extracellular solute-binding protein [Pseudomonadota bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q89VE9	Acetylornithine aminotransferase 1 OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=argD1 PE=3 SV=1
Q92SA0	Acetylornithine aminotransferase OS=Rhizobium meliloti (strain 1021) OX=266834 GN=argD PE=3 SV=1
Q8UI71	Acetylornithine aminotransferase OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=argD PE=3 SV=1

Gene family	Subfamily
Transcription Factors Family	bHLH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08511	COQ9	COQ9	Domain	Interproscan
PF13865	FoP_duplication	C-terminal duplication domain of Friend of PRMT1	Family	Interproscan
PF00202	Aminotran_3	Aminotransferase class-III	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF13416	SBP_bac_8	Bacterial extracellular solute-binding protein	Family	Interproscan
PF10607	CTLH	CTLH/CRA C-terminal to LisH motif domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013718	Domain	COQ9, C-terminal domain	Interproscan
IPR012762	Family	Ubiquinone biosynthesis protein COQ9	Interproscan
IPR025715	Domain	Chromatin target of PRMT1 protein, C-terminal	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR005814	Family	Aminotransferase class-III	Interproscan
IPR049704	Conserved_site	Aminotransferases class-III pyridoxal-phosphate attachment site	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR050103	Family	Class-III Pyridoxal-phosphate-dependent Aminotransferase	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR050359	Family	Basic helix-loop-helix transcription factors	Interproscan
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR039235	Family	Tubulin polyglutamylase complex subunit 1	Interproscan
IPR006059	Family	Bacterial-type extracellular solute-binding protein	Interproscan
IPR001188	Family	Spermidine/putrescine-binding periplasmic protein	Interproscan
IPR006311	Conserved_site	Twin-arginine translocation pathway, signal sequence	Interproscan
IPR045098	Family	Fyv10 family	Interproscan
IPR006595	Domain	CTLH, C-terminal LisH motif	Interproscan
IPR006594	Conserved_site	LIS1 homology motif	Interproscan
IPR024964	Domain	CTLH/CRA C-terminal to LisH motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21427	UBIQUINONE BIOSYNTHESIS PROTEIN COQ9, MITOCHONDRIAL	Interproscan
PTHR11986	AMINOTRANSFERASE CLASS III	Interproscan
PTHR19290	BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED	Interproscan
PTHR31932	TUBULIN POLYGLUTAMYLASE COMPLEX SUBUNIT 1	Interproscan
PTHR30222	SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN	Interproscan
PTHR12170	MACROPHAGE ERYTHROBLAST ATTACHER-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005743	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006744	Biological Process	ubiquinone biosynthetic process	Interproscan
GO:0008289	Molecular Function	lipid binding	Interproscan
GO:0008483	Molecular Function	transaminase activity	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0042802	Molecular Function	identical protein binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0018095	Biological Process	protein polyglutamylation	Interproscan
GO:0015846	Biological Process	polyamine transport	Interproscan
GO:0019808	Molecular Function	polyamine binding	Interproscan
GO:0042597	Cellular Component	periplasmic space	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0034657	Cellular Component	GID complex	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16581	TPGS1; tubulin polyglutamylase complex subunit 1	-	Transporters	ko02000	deepkoala
			Amino acid related enzymes	ko01007	deepkoala
			Transcription factors	ko03000	deepkoala
			Cofactor metabolism	-	deepkoala
			Cytoskeleton proteins	ko04812	deepkoala